Motif IL_95716.1 Version IL_95716.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3IGI_002 | 3IGI | 0.4226 | 0 | Triple sheared | A | Group IIC intron | C | 70 | U | 71 | A | 72 | A | 73 | C | 74 | * | G | 113 | G | 114 | A | 115 | C | 116 | G | 117 | cWW | ntSH | tHS | cWW | |
2 | IL_4YAZ_006 | 4YAZ | 0.3680 | 0 | Triple sheared | R | Cyclic di-GMP-I riboswitch | U | 16 | A | 17 | A | 18 | A | 19 | C | 20 | * | G | 35 | G | 36 | G | 37 | C | 38 | G | 39 | cWW | ntSH | tHS | cWW | |
3 | IL_3MXH_002 | 3MXH | 0.3242 | 0 | Triple sheared | R | c-di-GMP riboswitch | C | 22 | A | 23 | A | 24 | A | 25 | C | 26 | * | G | 41 | G | 42 | A | 43 | C | 44 | G | 45 | cWW | ntSH | tHS | cWW | |
4 | IL_3IWN_002 | 3IWN | 0.3248 | 0 | Triple sheared | A | C-di-GMP riboswitch | C | 12 | A | 13 | A | 14 | A | 15 | C | 16 | * | G | 31 | G | 32 | A | 33 | C | 34 | G | 35 | cWW | ntSH | tHS | cWW | |
5 | IL_8C3A_073 | 8C3A | 0.2499 | 0 | Triple sheared | 1 | LSU rRNA | U | 1641 | G | 1642 | A | 1643 | A | 1644 | U | 1645 | * | A | 1802 | G | 1803 | G | 1804 | A | 1805 | A | 1806 | cWW | tSH | ntHS | tHS | cWW |
6 | IL_5TBW_067 | 5TBW | 0.2851 | 0 | Triple sheared | 1 | LSU rRNA | U | 1645 | G | 1646 | A | 1647 | A | 1648 | U | 1649 | * | A | 1806 | G | 1807 | G | 1808 | A | 1809 | A | 1810 | cWW | tSH | tHS | tHS | cWW |
7 | IL_8VTW_074 | 8VTW | 0.3210 | 0 | Triple sheared (H) | 1A | LSU rRNA | C | 1882 | G | 1883 | A | 1884 | A | 1885 | C | 1886 | * | G | 1856 | G | 1857 | G | 1858 | A | 1859 | G | 1860 | cWW | tSH | tHS | tHS | cWW |
8 | IL_5J7L_310 | 5J7L | 0.2305 | 0 | Triple sheared | DA | LSU rRNA | U | 1720 | G | 1721 | A | 1722 | G | 1723 | G | 1724 | * | U | 1736 | G | 1737 | G | 1738 | A | 1739 | G | 1740 | cWW | tSH | tHS | ntHS | cWW |
9 | IL_8VTW_020 | 8VTW | 0.0733 | 0 | Triple sheared (H) | 1A | LSU rRNA | U | 703 | G | 704 | A | 705 | A | 706 | G | 707 | * | U | 724 | G | 725 | G | 726 | A | 727 | G | 728 | cWW | tSH | tHS | tHS | cWW |
10 | IL_5J7L_263 | 5J7L | 0.0000 | 0 | Triple sheared | DA | LSU rRNA | U | 703 | G | 704 | A | 705 | A | 706 | G | 707 | * | U | 724 | G | 725 | G | 726 | A | 727 | G | 728 | cWW | tSH | tHS | tHS | cWW |
11 | IL_4V9F_027 | 4V9F | 0.0853 | 0 | Triple sheared | 0 | LSU rRNA | U | 794 | G | 795 | A | 796 | A | 797 | G | 798 | * | U | 815 | G | 816 | G | 817 | A | 818 | A | 819 | cWW | ntSH | tHS | tHS | cWW |
12 | IL_4WF9_024 | 4WF9 | 0.0874 | 0 | Triple sheared | X | LSU rRNA | U | 748 | G | 749 | A | 750 | A | 751 | G | 752 | * | U | 769 | G | 770 | G | 771 | A | 772 | G | 773 | cWW | tHS | tHS | cWW | |
13 | IL_8C3A_033 | 8C3A | 0.0897 | 0 | Triple sheared | 1 | LSU rRNA | U | 830 | G | 831 | A | 832 | A | 833 | G | 834 | * | U | 851 | G | 852 | G | 853 | A | 854 | G | 855 | cWW | tSH | tHS | tHS | cWW |
14 | IL_5TBW_030 | 5TBW | 0.0972 | 0 | Triple sheared | 1 | LSU rRNA | U | 834 | G | 835 | A | 836 | A | 837 | G | 838 | * | U | 855 | G | 856 | G | 857 | A | 858 | G | 859 | cWW | tSH | tHS | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGAAG*UGGAG | 5 |
CAAAC*GGACG | 2 |
UGAAU*AGGAA | 2 |
CUAAC*GGACG | 1 |
UAAAC*GGGCG | 1 |
CGAAC*GGGAG | 1 |
UGAGG*UGGAG | 1 |
UGAAG*UGGAA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAA*GGA | 9 |
AAA*GAC | 2 |
UAA*GAC | 1 |
AAA*GGC | 1 |
GAG*GGA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Triple sheared (12)
- Triple sheared (H) (2)
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.25 | Max 0.47
Coloring options: