#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-84-75-6
1 IL_3IGI_0023IGI0.42260Triple shearedAGroup IIC intronC70U71A72A73C74*G113G114A115C116G117cWWntSHtHScWW
2 IL_4YAZ_0064YAZ0.36800Triple shearedRCyclic di-GMP-I riboswitchU16A17A18A19C20*G35G36G37C38G39cWWntSHtHScWW
3 IL_3MXH_0023MXH0.32420Triple shearedRc-di-GMP riboswitchC22A23A24A25C26*G41G42A43C44G45cWWntSHtHScWW
4 IL_3IWN_0023IWN0.32480Triple shearedAC-di-GMP riboswitchC12A13A14A15C16*G31G32A33C34G35cWWntSHtHScWW
5 IL_8C3A_0738C3A0.24990Triple sheared1 LSU rRNAU1641G1642A1643A1644U1645*A1802G1803G1804A1805A1806cWWtSHntHStHScWW
6 IL_5TBW_0675TBW0.28510Triple sheared1 LSU rRNAU1645G1646A1647A1648U1649*A1806G1807G1808A1809A1810cWWtSHtHStHScWW
7 IL_8VTW_0748VTW0.32100Triple sheared (H)1A LSU rRNAC1882G1883A1884A1885C1886*G1856G1857G1858A1859G1860cWWtSHtHStHScWW
8 IL_5J7L_3105J7L0.23050Triple shearedDA LSU rRNAU1720G1721A1722G1723G1724*U1736G1737G1738A1739G1740cWWtSHtHSntHScWW
9 IL_8VTW_0208VTW0.07330Triple sheared (H)1A LSU rRNAU703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
10 IL_5J7L_2635J7L0.00000Triple shearedDA LSU rRNAU703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
11 IL_4V9F_0274V9F0.08530Triple sheared0 LSU rRNAU794G795A796A797G798*U815G816G817A818A819cWWntSHtHStHScWW
12 IL_4WF9_0244WF90.08740Triple shearedX LSU rRNAU748G749A750A751G752*U769G770G771A772G773cWWtHStHScWW
13 IL_8C3A_0338C3A0.08970Triple sheared1 LSU rRNAU830G831A832A833G834*U851G852G853A854G855cWWtSHtHStHScWW
14 IL_5TBW_0305TBW0.09720Triple sheared1 LSU rRNAU834G835A836A837G838*U855G856G857A858G859cWWtSHtHStHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAAG*UGGAG5
CAAAC*GGACG2
UGAAU*AGGAA2
CUAAC*GGACG1
UAAAC*GGGCG1
CGAAC*GGGAG1
UGAGG*UGGAG1
UGAAG*UGGAA1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*GGA9
AAA*GAC2
UAA*GAC1
AAA*GGC1
GAG*GGA1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Triple sheared (12)
  • Triple sheared (H) (2)
  • Basepair signature
    cWW-tSH-tHS-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.25 | Max 0.47
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