Motif IL_96206.2 Version IL_96206.2 of this group appears in releases 1.9 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-2 | 1-5 | 2-3 | 3-5 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_012 | 1FJG | 0.4522 | 1 | A | SSU rRNA | A | 274 | G | 275 | * | U | 249 | A | 250 | U | 252 | cWW | cWW | |||
2 | IL_1S72_017 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | G | 554 | U | 555 | * | A | 602 | A | 603 | C | 605 | cWW | cWW | |||
3 | IL_1XJR_004 | 1XJR | 0.6208 | 1 | 180 degree turn | A | s2m RNA | G | 19 | C | 20 | * | G | 28 | A | 29 | C | 31 | ncsS | cWW | cWW | ncsS |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AG*UAGU | 1 |
GU*AAGC | 1 |
GC*GAUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*AG | 2 |
*AU | 1 |
Release history
Release | 1.9 | 1.10 | 1.11 |
---|---|---|---|
Date | 2013-12-07 | 2014-01-04 | 2014-02-01 |
Status | Updated, 2 parents | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_96206.2 | Only in the parent motif |
---|---|---|---|
IL_96206.1 Compare | IL_1S72_017, IL_1XJR_004 | IL_1FJG_012 | |
IL_80348.1 Compare | IL_1FJG_012 | IL_1S72_017, IL_1XJR_004 | IL_4IOA_023, IL_3U5F_020 |
Children motifs
Child motif | Common motif instances | Only in IL_96206.2 | Only in the child motif |
---|---|---|---|
IL_96206.3 Compare | IL_1S72_017, IL_1XJR_004 | IL_1FJG_012 | |
IL_80348.3 Compare | IL_1FJG_012 | IL_1S72_017, IL_1XJR_004 | IL_4IOA_023, IL_3U5F_020 |
- Annotations
-
- (2)
- 180 degree turn (1)
- Basepair signature
- cWW-cSS-R-cWW
- Heat map statistics
- Min 0.45 | Avg 0.43 | Max 0.86
Coloring options: