Motif IL_97509.2 Version IL_97509.2 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1VW3_089 | 1VW3 | 0.2854 | 0 | A | 21S ribosomal RNA | A | 2978 | U | 2979 | A | 2980 | U | 2981 | U | 3002 | * | A | 3007 | U | 3008 | A | 3009 | U | 3010 | U | 3011 | cWW | cWw | ncwW | cWW | |
2 | IL_4BPP_046 | 4BPP | 0.0000 | 0 | A | 18S RRNA | A | 901 | G | 902 | G | 903 | A | 904 | C | 905 | * | G | 863 | U | 864 | A | 865 | U | 866 | U | 867 | cWW | cWWa | cWW | cWW | |
3 | IL_3U5F_003 | 3U5F | 0.8216 | 1 | 6 | 18S rRNA | U | 466 | G | 467 | C | 469 | A | 470 | A | 471 | * | U | 37 | C | 38 | A | 39 | A | 40 | A | 41 | cWW | tSH | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AUAUU*AUAUU | 1 |
AGGAC*GUAUU | 1 |
UGACAA*UCAAA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UAU*UAU | 1 |
GGA*UAU | 1 |
GACA*CAA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | Updated, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_97509.2 | Only in the parent motif |
---|---|---|---|
IL_97509.1 Compare | IL_4BPP_046, IL_3U5F_003 | IL_1VW3_089 |
Children motifs
Child motif | Common motif instances | Only in IL_97509.2 | Only in the child motif |
---|---|---|---|
IL_96952.1 Compare | IL_4BPP_046, IL_1VW3_089, IL_3U5F_003 | IL_4CUX_026, IL_4CUX_004, IL_4CUX_006, IL_4CUX_047 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-cWW-cWW-cWW
- Heat map statistics
- Min 0.29 | Avg 0.43 | Max 0.83
Coloring options: