#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-84-75-6
1 IL_1VW3_0891VW30.28540A21S ribosomal RNAA2978U2979A2980U2981U3002*A3007U3008A3009U3010U3011cWWcWwncwWcWW
2 IL_4BPP_0464BPP0.00000A18S RRNAA901G902G903A904C905*G863U864A865U866U867cWWcWWacWWcWW
3 IL_3U5F_0033U5F0.82161618S rRNAU466G467C469A470A471*U37C38A39A40A41cWWtSHcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUAUU*AUAUU1
AGGAC*GUAUU1
UGACAA*UCAAA1
Non-Watson-Crick part of the motif
SequenceCounts
UAU*UAU1
GGA*UAU1
GACA*CAA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_97509.2Only in the parent motif
IL_97509.1
Compare
IL_4BPP_046, IL_3U5F_003IL_1VW3_089

Children motifs

Child motifCommon motif instancesOnly in IL_97509.2Only in the child motif
IL_96952.1
Compare
IL_4BPP_046, IL_1VW3_089, IL_3U5F_003IL_4CUX_026, IL_4CUX_004, IL_4CUX_006, IL_4CUX_047
Annotations
  • (3)
  • Basepair signature
    cWW-L-R-cWW-cWW-cWW
    Heat map statistics
    Min 0.29 | Avg 0.43 | Max 0.83
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