#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 71-31-72-63-74-75-6
1 IL_4BPP_0234BPP0.79680A18S RRNAC435C436A437A438U439*A452G453cSHcWWtWHcWScWW
2 IL_1FJG_0131FJG0.00000C-loop (H)A SSU rRNAU304G305G306C307C308*G292G293cWWntHScWW
3 IL_2AW7_0162AW70.35650A16S ribosomal RNAU304G305A306C307C308*G292G293cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCAAU*AG1
UGGCC*GG1
UGACC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
CAA*1
GGC*1
GAC*1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_98421.4Only in the parent motif
IL_98421.3
Compare
IL_1FJG_013, IL_2AW7_016IL_4BPP_023IL_3U5H_123

Children motifs

Child motifCommon motif instancesOnly in IL_98421.4Only in the child motif
IL_98421.5
Compare
IL_1FJG_013, IL_2AW7_016IL_4BPP_023IL_3U5H_123
IL_96920.1
Compare
IL_4BPP_023IL_1FJG_013, IL_2AW7_016
Annotations
  • (2)
  • C-loop (H) (1)
  • Basepair signature
    cWW-L-L-L-cWW
    Heat map statistics
    Min 0.36 | Avg 0.46 | Max 0.93
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