Motif IL_98421.4 Version IL_98421.4 of this group appears in releases 1.5 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-6 | 3-7 | 4-7 | 5-6 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4BPP_023 | 4BPP | 0.7968 | 0 | A | 18S RRNA | C | 435 | C | 436 | A | 437 | A | 438 | U | 439 | * | A | 452 | G | 453 | cSH | cWW | tWH | cWS | cWW | ||
2 | IL_1FJG_013 | 1FJG | 0.0000 | 0 | C-loop (H) | A | SSU rRNA | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | ntHS | cWW | |||
3 | IL_2AW7_016 | 2AW7 | 0.3565 | 0 | A | 16S ribosomal RNA | U | 304 | G | 305 | A | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CCAAU*AG | 1 |
UGGCC*GG | 1 |
UGACC*GG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CAA* | 1 |
GGC* | 1 |
GAC* | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_98421.4 | Only in the parent motif |
---|---|---|---|
IL_98421.3 Compare | IL_1FJG_013, IL_2AW7_016 | IL_4BPP_023 | IL_3U5H_123 |
Children motifs
Child motif | Common motif instances | Only in IL_98421.4 | Only in the child motif |
---|---|---|---|
IL_98421.5 Compare | IL_1FJG_013, IL_2AW7_016 | IL_4BPP_023 | IL_3U5H_123 |
IL_96920.1 Compare | IL_4BPP_023 | IL_1FJG_013, IL_2AW7_016 |
- Annotations
-
- (2)
- C-loop (H) (1)
- Basepair signature
- cWW-L-L-L-cWW
- Heat map statistics
- Min 0.36 | Avg 0.46 | Max 0.93
Coloring options: