Motif IL_99772.1 Version IL_99772.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V88_466 | 4V88 | 0.6048 | 1 | Non canonical cWW and near pair | A6 | SSU rRNA | C | 1644 | G | 1645 | C | 1646 | U | 1647 | * | A | 1753 | A | 1754 | A | 1756||A | G | 1757 | cWW | ncWW | ntWW | cWW |
2 | IL_7R9F_001 | 7R9F | 0.2970 | 0 | B | RNA (18-mer) | C | 5 | G | 6 | G | 7 | G | 8 | * | C | 5||||8_555 | G | 6||||8_555 | G | 7||||8_555 | G | 8||||8_555 | cWW | cWW | |||
3 | IL_7LYF_005 | 7LYF | 0.0000 | 0 | A | tRNA | U | 46 | G | 47 | G | 48 | A | 49 | * | U | 83 | C | 84 | A | 85 | A | 86 | cWW | ncWW | ncWW | cWW | |
4 | IL_7R9G_002 | 7R9G | 0.2380 | 0 | B | RNA (18-mer) | C | 5 | G | 6 | G | 7 | G | 8 | * | C | 5||||2_555 | G | 6||||2_555 | G | 7||||2_555 | G | 8||||2_555 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGGG*CGGG | 2 |
CGCU*AAAAG | 1 |
UGGA*UCAA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GG*GG | 2 |
GC*AAA | 1 |
GG*CA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Non canonical cWW and near pair (1)
- Basepair signature
- cWW-L-R-L-R-cWW
- Heat map statistics
- Min 0.24 | Avg 0.36 | Max 0.67
Coloring options: