Motif J3_11279.2 Version J3_11279.2 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 2-18 | 3-17 | 4-12 | 4-15 | 5-11 | 5-14 | 5-15 | 7-10 | 8-9 | 12-13 | 16-17 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8C3A_038 | 8C3A | 0.0863 | 0 | CM | SSU rRNA | U | 1596 | G | 1597 | A | 1598 | U | 1599 | U | 1600 | A | 1601 | C | 1602 | G | 1603 | * | C | 1146 | C | 1147 | A | 1148 | G | 1149 | * | C | 1568 | U | 1569 | A | 1570 | G | 1571 | U | 1572 | A | 1573 | A | 1574 | cWW | tSH | tHW | cSs | tWWa | tHH | cWW | cWW | cSH | |||
| 2 | J3_4V88_035 | 4V88 | 0.0000 | 0 | A6 | SSU rRNA | U | 1609 | G | 1610 | A | 1611 | U | 1612 | U | 1613 | A | 1614 | C | 1615 | G | 1616 | * | C | 1161 | C | 1162 | A | 1163 | G | 1164 | * | C | 1581 | U | 1582 | A | 1583 | G | 1584 | U | 1585 | A | 1586 | A | 1587 | cWW | tSH | tHW | cSs | tWWa | ntHH | cWW | cWW | cSH | |||
| 3 | J3_4LFB_002 | 4LFB | 0.5785 | 0 | A | SSU rRNA | U | 1372 | G | 1373 | A | 1374 | A | 1375 | U | 1376 | A | 1377 | C | 1378 | G | 1379 | * | C | 936 | A | 937 | A | 938 | G | 939 | * | C | 1344 | U | 1345 | A | 1346 | G | 1347 | U | 1348 | A | 1349 | A | 1350 | cWW | tSH | tHW | csS | tHH | cSs | tWWa | tHS | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAG*CUAGUAA*UGAUUACG | 2 |
| CAAG*CUAGUAA*UGAAUACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CA*UAGUA*GAUUAC | 2 |
| AA*UAGUA*GAAUAC | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-cSS-tWW-tHH-F-F-cWW-cWW-F
- Heat map statistics
- Min 0.09 | Avg 0.28 | Max 0.58
Coloring options: