Motif J3_19545.1 Version J3_19545.1 of this group appears in releases 3.91 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-7 | 3-10 | 3-11 | 5-6 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_006 | 4V9F | 0.1039 | 2 | 0 | LSU rRNA | C | 1680 | G | 1681 | A | 1682 | A | 1685 | C | 1686 | * | G | 1695 | U | 1696 | G | 1697 | * | U | 1412 | A | 1413 | A | 1414 | G | 1415 | cWW | tSH | tHW | tWW | cWW | cWW | |
| 2 | J3_8P9A_054 | 8P9A | 0.0000 | 2 | AR | LSU rRNA | U | 1837 | G | 1838 | A | 1839 | A | 1842 | C | 1843 | * | G | 1852 | U | 1853 | C | 1854 | * | G | 1488 | A | 1489 | A | 1490 | A | 1491 | cWW | tSH | tHW | ntWW | cWW | cWW | |
| 3 | J3_5J7L_042 | 5J7L | 0.8796 | 2 | DA | LSU rRNA | C | 1605 | C | 1606 | C | 1607 | A | 1610 | C | 1611 | * | G | 1620 | U | 1621 | G | 1622 | * | C | 1306 | A | 1307 | A | 1308 | G | 1309 | cWW | ntSH | cWW | cWW | |||
| 4 | J3_8P9A_053 | 8P9A | 0.9778 | 2 | AR | LSU rRNA | U | 1479 | G | 1480 | A | 1481 | U | 1484 | G | 1485 | * | C | 1857 | A | 1858 | A | 1859 | * | U | 1871 | C | 1872 | U | 1873 | A | 1874 | cWW | tSH | ntHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*CGAGAAC*GUG | 1 |
| GAAA*UGAUAAC*GUC | 1 |
| CAAG*CCCAAAC*GUG | 1 |
| UGAAGUG*CAA*UCUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*GAGAA*U | 1 |
| AA*GAUAA*U | 1 |
| AA*CCAAA*U | 1 |
| GAAGU*A*CU | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Heat map statistics
- Min 0.10 | Avg 0.55 | Max 0.99
Coloring options: