Motif J3_37047.1 Version J3_37047.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 1-16 | 2-3 | 4-15 | 5-6 | 6-14 | 8-9 | 12-13 | 14-16 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4LFB_009 | 4LFB | 0.1454 | 1 | A | SSU rRNA | C | 1296 | C | 1297 | C | 1298 | A | 1299 | G | 1300 | U | 1301 | U | 1302 | C | 1303 | * | G | 1334 | C | 1335 | C | 1336 | G | 1337 | * | C | 1237 | A | 1238 | A | 1239 | G | 1241 | cWW | cSH | ntHH | ncSH | tWH | cWW | cWW | ncsS |
| 2 | J3_5J7L_011 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | C | 1296 | G | 1297 | U | 1298 | A | 1299 | G | 1300 | U | 1301 | C | 1302 | C | 1303 | * | G | 1334 | U | 1335 | C | 1336 | G | 1337 | * | C | 1237 | A | 1238 | A | 1239 | G | 1241 | cWW | cSH | tWH | cWW | cWW | ncsS | ||
| 3 | J3_4V88_041 | 4V88 | 0.2599 | 1 | A6 | SSU rRNA | C | 1533 | G | 1534 | U | 1535 | G | 1536 | C | 1537 | U | 1538 | G | 1539 | G | 1540 | * | C | 1571 | G | 1572 | A | 1573 | G | 1574 | * | C | 1470 | A | 1471 | C | 1472 | G | 1474 | cWW | tWH | cWW | cWW | ncsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUG*CCCAGUUC*GCCG | 1 |
| CAAUG*CGUAGUCC*GUCG | 1 |
| CACUG*CGUGCUGG*CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAU*CCAGUU*CC | 1 |
| AAU*GUAGUC*UC | 1 |
| ACU*GUGCUG*GA | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Heat map statistics
- Min 0.15 | Avg 0.16 | Max 0.33
Coloring options: