#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8break 9 10 11 121-122-113-73-115-68-9
1 J3_5TBW_0095TBW0.179021 LSU rRNAU1837G1838A1839A1842C1843*G1852U1853C1854*G1488A1489A1490A1491cWWntSHtHWntWWcWWcWW
2 J3_4V9F_0064V9F0.164620 LSU rRNAC1680G1681A1682A1685C1686*G1695U1696G1697*U1412A1413A1414G1415cWWtSHtHWtWWcWWcWW
3 J3_5J7L_0425J7L0.00002DA LSU rRNAC1605C1606A1608A1610C1611*G1620U1621G1622*C1306A1307A1308G1309cWWntSHtHWtWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAA*UGAUAAC*GUC1
UAAG*CGAGAAC*GUG1
CAAG*CCCAAAC*GUG1
Non-Watson-Crick part of the motif
SequenceCounts
AA*GAUAA*U1
AA*GAGAA*U1
AA*CCAAA*U1

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.53
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-05
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Basepair signature
    cWW-tSH-tWW-tHW-F-F-cWW-cWW
    Heat map statistics
    Min 0.11 | Avg 0.10 | Max 0.18
    Help

    Coloring options:

    J3_5TBW_009:J3_5TBW_009 = 0J3_5TBW_009:J3_4V9F_006 = 0.105J3_5TBW_009:J3_5J7L_042 = 0.179J3_4V9F_006:J3_5TBW_009 = 0.105J3_4V9F_006:J3_4V9F_006 = 0J3_4V9F_006:J3_5J7L_042 = 0.1646J3_5J7L_042:J3_5TBW_009 = 0.179J3_5J7L_042:J3_4V9F_006 = 0.1646J3_5J7L_042:J3_5J7L_042 = 0J3_5TBW_009J3_4V9F_006J3_5J7L_042Discrepancy0.000.050.100.15
    Copyright 2025 BGSU RNA group. Page generated in 0.2977 s