#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9break 10 11 12 13break 14 15 16 17 181-182-82-163-63-145-137-159-1013-1417-18
1 J3_3SKI_0013SKI0.70701ARNA (68-MER)U52G53A54C56C57C58G59C60C61*G78A79C80U81*A30C31A32G33G34cWWcWWcWScWWcWWcWWcSH
2 J3_3SKL_0023SKL0.69721BRNA (66-MER)U51G52A53C55C56C57G58C59C60*G77A78C79U80*A29C30A31G32G33cWWcWWcWScWWcWWcWWcSH
3 J3_3LA5_0013LA50.10641APurine riboswitchA45G46C47U49C50C51A52C53C54*G72A73C74U75*A21U22A23A24U25cWWcWWtSWcWScWWcWWcWW
4 J3_4LX6_0014LX60.11381APurine riboswitchA45G46C47U49C50C51A52C53C54*G72A73C74U75*A21U22A23A24U25cWWcWWtSWcWScWWcWWcWW
5 J3_4XNR_0014XNR0.08751XPurine riboswitchA45G46U47U49C50U51A52C53C54*G72A73U74U75*A21U22A23A24U25cWWcWWtSWntWHncsScWScWWcWWcWW
6 J3_1Y26_0011Y260.09661XPurine riboswitchA45G46U47U49C50U51A52C53C54*G72A73U74U75*A21U22A23A24U25cWWcWWtSWntWHcWScWWcWWcWW
7 J3_1Y27_0011Y270.09131XPurine riboswitchA45G46U47U49C50U51A52C53C54*G72A73C74U75*A21U22A23A24U25cWWcWWtSWcWScWWcWWcWW
8 J3_3RKF_0033RKF0.00001CGuanine riboswitchG45G46U47U49C50U51A52C53C54*G72A73C74U75*A21U22A23A24C25cWWcWWtSWntWHncsScWScWWcWWcWW
9 J3_3IVN_0013IVN0.72231APurine riboswitchG36G37U38U40C41U42A43C44C45*G63A64C65U66*A12U13A14A15C16cWWcWWtSWcWScWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
ACAGG*UGACCCCGCC*GACU2
AUAAU*AGCUUCCACC*GACU2
AUAAU*AGUUUCUACC*GAUU2
AUAAU*AGUUUCUACC*GACU1
AUAAC*GGUUUCUACC*GACU1
AUAAC*GGUGUCUACC*GACU1
Non-Watson-Crick part of the motif
SequenceCounts
CAG*GACCCCGC*AC2
UAA*GCUUCCAC*AC2
UAA*GUUUCUAC*AU2
UAA*GUUUCUAC*AC2
UAA*GUGUCUAC*AC1

Release history

Release3.883.89
Date2024-09-112024-10-09
StatusNew id, no parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (9)
  • Basepair signature
    cWW-cWW-tSW-F-F-F-cWW-cWS-cWW-F-F-F-cWW
    Heat map statistics
    Min 0.04 | Avg 0.42 | Max 0.95
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