#SLoop idPDBDisc#Non-coreChain(s) 1 2 3 4 5break 6 7 8 9 10 11 12 13 14break 15 16 17 181-81-182-123-74-55-67-138-1110-1814-15
1 J3_3SKI_0013SKI0.70701AA30C31A32G33G34*U52G53A54C56C57C58G59C60C61*G78A79C80U81cWWcWWcSHcWWcWWcWScWW
2 J3_3SKL_0023SKL0.69721BA29C30A31G32G33*U51G52A53C55C56C57G58C59C60*G77A78C79U80cWWcWWcSHcWWcWWcWScWW
3 J3_3LA5_0013LA50.10641AA21U22A23A24U25*A45G46C47U49C50C51A52C53C54*G72A73C74U75cWWcWWtWScWWcWWcWScWW
4 J3_4LX6_0014LX60.11381AA21U22A23A24U25*A45G46C47U49C50C51A52C53C54*G72A73C74U75cWWcWWtWScWWcWWcWScWW
5 J3_4XNR_0014XNR0.08751XA21U22A23A24U25*A45G46U47U49C50U51A52C53C54*G72A73U74U75ncSscWWcWWtWScWWcWWntWHcWScWW
6 J3_1Y26_0011Y260.09661XA21U22A23A24U25*A45G46U47U49C50U51A52C53C54*G72A73U74U75cWWcWWtWScWWcWWntWHcWScWW
7 J3_1Y27_0011Y270.09131XA21U22A23A24U25*A45G46U47U49C50U51A52C53C54*G72A73C74U75cWWcWWtWScWWcWWcWScWW
8 J3_3RKF_0033RKF0.00001CA21U22A23A24C25*G45G46U47U49C50U51A52C53C54*G72A73C74U75ncSscWWcWWtWScWWcWWntWHcWScWW
9 J3_3IVN_0013IVN0.72231AA12U13A14A15C16*G36G37U38U40C41U42A43C44C45*G63A64C65U66cWWcWWtWScWWcWWcWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
ACAGG*UGACCCCGCC*GACU2
AUAAU*AGCUUCCACC*GACU2
AUAAU*AGUUUCUACC*GAUU2
AUAAU*AGUUUCUACC*GACU1
AUAAC*GGUUUCUACC*GACU1
AUAAC*GGUGUCUACC*GACU1
Non-Watson-Crick part of the motif
SequenceCounts
CAG*GACCCCGC*AC2
UAA*GCUUCCAC*AC2
UAA*GUUUCUAC*AU2
UAA*GUUUCUAC*AC2
UAA*GUGUCUAC*AC1

Release history

Release3.883.893.903.913.923.933.943.953.963.97
Date2024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-262025-04-232025-05-21
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (9)
  • Basepair signature
    cWW-cWW-tSW-F-F-F-cWW-cWS-cWW-F-F-F-cWW
    Heat map statistics
    Min 0.04 | Avg 0.42 | Max 0.95
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.5401 s