Motif J3_44163.1 Version J3_44163.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-8 | 2-16 | 3-6 | 3-14 | 5-13 | 7-15 | 9-10 | 13-14 | 17-18 | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_3SKI_001 | 3SKI | 0.7070 | 1 | A | RNA (68-MER) | U | 52 | G | 53 | A | 54 | C | 56 | C | 57 | C | 58 | G | 59 | C | 60 | C | 61 | * | G | 78 | A | 79 | C | 80 | U | 81 | * | A | 30 | C | 31 | A | 32 | G | 33 | G | 34 | cWW | cWW | cWS | cWW | cWW | cWW | cSH | |||
2 | J3_3SKL_002 | 3SKL | 0.6972 | 1 | B | RNA (66-MER) | U | 51 | G | 52 | A | 53 | C | 55 | C | 56 | C | 57 | G | 58 | C | 59 | C | 60 | * | G | 77 | A | 78 | C | 79 | U | 80 | * | A | 29 | C | 30 | A | 31 | G | 32 | G | 33 | cWW | cWW | cWS | cWW | cWW | cWW | cSH | |||
3 | J3_3LA5_001 | 3LA5 | 0.1064 | 1 | A | Purine riboswitch | A | 45 | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | C | 54 | * | G | 72 | A | 73 | C | 74 | U | 75 | * | A | 21 | U | 22 | A | 23 | A | 24 | U | 25 | cWW | cWW | tSW | cWS | cWW | cWW | cWW | |||
4 | J3_4LX6_001 | 4LX6 | 0.1138 | 1 | A | Purine riboswitch | A | 45 | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | C | 54 | * | G | 72 | A | 73 | C | 74 | U | 75 | * | A | 21 | U | 22 | A | 23 | A | 24 | U | 25 | cWW | cWW | tSW | cWS | cWW | cWW | cWW | |||
5 | J3_4XNR_001 | 4XNR | 0.0875 | 1 | X | Purine riboswitch | A | 45 | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | C | 54 | * | G | 72 | A | 73 | U | 74 | U | 75 | * | A | 21 | U | 22 | A | 23 | A | 24 | U | 25 | cWW | cWW | tSW | ntWH | ncsS | cWS | cWW | cWW | cWW | |
6 | J3_1Y26_001 | 1Y26 | 0.0966 | 1 | X | Purine riboswitch | A | 45 | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | C | 54 | * | G | 72 | A | 73 | U | 74 | U | 75 | * | A | 21 | U | 22 | A | 23 | A | 24 | U | 25 | cWW | cWW | tSW | ntWH | cWS | cWW | cWW | cWW | ||
7 | J3_1Y27_001 | 1Y27 | 0.0913 | 1 | X | Purine riboswitch | A | 45 | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | C | 54 | * | G | 72 | A | 73 | C | 74 | U | 75 | * | A | 21 | U | 22 | A | 23 | A | 24 | U | 25 | cWW | cWW | tSW | cWS | cWW | cWW | cWW | |||
8 | J3_3RKF_003 | 3RKF | 0.0000 | 1 | C | Guanine riboswitch | G | 45 | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | C | 54 | * | G | 72 | A | 73 | C | 74 | U | 75 | * | A | 21 | U | 22 | A | 23 | A | 24 | C | 25 | cWW | cWW | tSW | ntWH | ncsS | cWS | cWW | cWW | cWW | |
9 | J3_3IVN_001 | 3IVN | 0.7223 | 1 | A | Purine riboswitch | G | 36 | G | 37 | U | 38 | U | 40 | C | 41 | U | 42 | A | 43 | C | 44 | C | 45 | * | G | 63 | A | 64 | C | 65 | U | 66 | * | A | 12 | U | 13 | A | 14 | A | 15 | C | 16 | cWW | cWW | tSW | cWS | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
ACAGG*UGACCCCGCC*GACU | 2 |
AUAAU*AGCUUCCACC*GACU | 2 |
AUAAU*AGUUUCUACC*GAUU | 2 |
AUAAU*AGUUUCUACC*GACU | 1 |
AUAAC*GGUUUCUACC*GACU | 1 |
AUAAC*GGUGUCUACC*GACU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CAG*GACCCCGC*AC | 2 |
UAA*GCUUCCAC*AC | 2 |
UAA*GUUUCUAC*AU | 2 |
UAA*GUUUCUAC*AC | 2 |
UAA*GUGUCUAC*AC | 1 |
- Annotations
-
- (9)
- Basepair signature
- cWW-cWW-tSW-F-F-F-cWW-cWS-cWW-F-F-F-cWW
- Heat map statistics
- Min 0.04 | Avg 0.42 | Max 0.95
Coloring options: