Motif J3_44163.1 Version J3_44163.1 of this group appears in releases 3.88 to 3.97

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10		11		12		13		14	break		15		16		17		18	1-8	1-18	2-12	3-7	4-5	5-6	7-13	8-11	10-18	14-15
1	J3_3SKI_001	3SKI	0.7070	1	A	RNA (68-MER)	A	30	C	31	A	32	G	33	G	34	*	U	52	G	53	A	54	C	56	C	57	C	58	G	59	C	60	C	61	*	G	78	A	79	C	80	U	81		cWW	cWW		cSH	cWW	cWW		cWS	cWW
2	J3_3SKL_002	3SKL	0.6972	1	B	RNA (66-MER)	A	29	C	30	A	31	G	32	G	33	*	U	51	G	52	A	53	C	55	C	56	C	57	G	58	C	59	C	60	*	G	77	A	78	C	79	U	80		cWW	cWW		cSH	cWW	cWW		cWS	cWW
3	J3_3LA5_001	3LA5	0.1064	1	A	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	C	47	U	49	C	50	C	51	A	52	C	53	C	54	*	G	72	A	73	C	74	U	75		cWW	cWW	tWS		cWW	cWW		cWS	cWW
4	J3_4LX6_001	4LX6	0.1138	1	A	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	C	47	U	49	C	50	C	51	A	52	C	53	C	54	*	G	72	A	73	C	74	U	75		cWW	cWW	tWS		cWW	cWW		cWS	cWW
5	J3_4XNR_001	4XNR	0.0875	1	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	U	47	U	49	C	50	U	51	A	52	C	53	C	54	*	G	72	A	73	U	74	U	75	ncSs	cWW	cWW	tWS		cWW	cWW	ntWH	cWS	cWW
6	J3_1Y26_001	1Y26	0.0966	1	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	U	47	U	49	C	50	U	51	A	52	C	53	C	54	*	G	72	A	73	U	74	U	75		cWW	cWW	tWS		cWW	cWW	ntWH	cWS	cWW
7	J3_1Y27_001	1Y27	0.0913	1	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	U	47	U	49	C	50	U	51	A	52	C	53	C	54	*	G	72	A	73	C	74	U	75		cWW	cWW	tWS		cWW	cWW		cWS	cWW
8	J3_3RKF_003	3RKF	0.0000	1	C	Guanine riboswitch	A	21	U	22	A	23	A	24	C	25	*	G	45	G	46	U	47	U	49	C	50	U	51	A	52	C	53	C	54	*	G	72	A	73	C	74	U	75	ncSs	cWW	cWW	tWS		cWW	cWW	ntWH	cWS	cWW
9	J3_3IVN_001	3IVN	0.7223	1	A	Purine riboswitch	A	12	U	13	A	14	A	15	C	16	*	G	36	G	37	U	38	U	40	C	41	U	42	A	43	C	44	C	45	*	G	63	A	64	C	65	U	66		cWW	cWW	tWS		cWW	cWW		cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACAGGUGACCCCGCCGACU	2
AUAAUAGCUUCCACCGACU	2
AUAAUAGUUUCUACCGAUU	2
AUAAUAGUUUCUACCGACU	1
AUAACGGUUUCUACCGACU	1
AUAACGGUGUCUACCGACU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAGGACCCCGCAC	2
UAAGCUUCCACAC	2
UAAGUUUCUACAU	2
UAAGUUUCUACAC	2
UAAGUGUCUACAC	1

Release history

Release	3.88	3.89	3.90	3.91	3.92	3.93	3.94	3.95	3.96	3.97
Date	2024-09-11	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26	2025-04-23	2025-05-21
Status	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (9)
Basepair signature: cWW-cWW-tSW-F-F-F-cWW-cWS-cWW-F-F-F-cWW
Heat map statistics: Min 0.04 | Avg 0.42 | Max 0.95

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.0891 s