Motif J3_61124.1 Version J3_61124.1 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6		7	break		8		9		10	1-3	1-10	3-6	3-9	4-5	7-8
1	J3_5J7L_045	5J7L	0.2266	2	DA	LSU rRNA	C	2332	A	2333	A	2335	G	2337	*	C	2295	U	2296	A	2297	*	U	2321	A	2322	G	2323		cWW	tHW	tWW	cWW	cWW
2	J3_9DFE_016	9DFE	0.1589	2	1A	LSU rRNA	U	2332	A	2333	A	2335	G	2337	*	C	2295	U	2296	C	2297	*	G	2321	A	2322	G	2323	ncSs	cWW	tHW	tWW	cWW	cWW
3	J3_4WF9_008	4WF9	0.1213	2	X	LSU rRNA	C	2359	A	2360	A	2362	G	2364	*	C	2322	U	2323	C	2324	*	G	2348	A	2349	G	2350		cWW	tHW	tWW	cWW	cWW
4	J3_4V9F_008	4V9F	0.0000	2	0	LSU rRNA	C	2366	A	2367	A	2369	G	2371	*	C	2329	U	2330	C	2331	*	G	2355	A	2356	G	2357		cWW	tHW	tWW	cWW	cWW
5	J3_8P9A_062	8P9A	0.1435	2	AR	LSU rRNA	U	2701	A	2702	A	2704	G	2706	*	C	2664	U	2665	C	2666	*	G	2690	A	2691	A	2692		cWW	tHW	tWW	cWW	cWW
6	J3_7A0S_010	7A0S	0.2670	2	X	LSU rRNA	U	2311	A	2312	A	2314	G	2316	*	C	2274	U	2275	C	2276	*	G	2300	A	2301	G	2302		cWW		ncWB	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCGAGUAGAAG	2
CUAUAGCAUAAG	1
CUCGAGCAUAAG	1
CUCGAGCAAAAG	1
CUCGAAUAAAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAAUAA	2
UAAGAA	2
UAAAAA	2

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	New id, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-F-tWW-tHW-cWW-cWW
Heat map statistics: Min 0.12 | Avg 0.19 | Max 0.30

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Coloring options: Nucleotide numbers

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