RNA 3D Hub //

Motif J3_64189.1 Version J3_64189.1 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9break 10 111-112-93-56-79-10
1 J3_9DFE_0079DFE0.216831A LSU rRNAC683G684A685C687U688A689*U773A774G775*C791G794cWWtWHtSWcWWcWW
2 J3_7A0S_0047A0S0.13363X LSU rRNAU696G697A698C700U701A702*U786A787G788*C804A807cWWtWHtSWcWWcWW
3 J3_4V9F_0024V9F0.089330 LSU rRNAC774G775A776C778U779A780*U866A867G868*C884G887cWWtWHtSWcWWcWW
4 J3_5J7L_0385J7L0.00003DA LSU rRNAU683G684A685C687U688A689*U773G774G775*C791A794cWWtWHtSWcWWcWW
5 J3_8P9A_0498P9A0.08143AR LSU rRNAU814G815A816C818U819A820*U905A906G907*C923A926cWWtWHtSWcWWcWW
6 J3_4WF9_0024WF90.09193X LSU rRNAU728G729A730C732U733A734*U818A819G820*C836A839cWWtWHtSWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAGCUA*UAG*CGAG1
UGAGCUA*UAG*CGAA1
CGAUCUA*UAG*CGAG1
UGAUCUA*UGG*CAAA1
UGAACUA*UAG*CGAA1
UGAUCUA*UAG*CGAA1
Non-Watson-Crick part of the motif
SequenceCounts
GAGCU*A*GA2
GAUCU*A*GA2
GAUCU*G*AA1
GAACU*A*GA1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusNew id, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
    • Basepair signature
    cWW-tWH-cWW-tSW-F-F-cWW
    Heat map statistics
    Min 0.08 | Avg 0.12 | Max 0.36
    Help

    Coloring options:

    J3_9DFE_007:J3_9DFE_007 = 0J3_9DFE_007:J3_7A0S_004 = 0.1376J3_9DFE_007:J3_4V9F_002 = 0.1809J3_9DFE_007:J3_5J7L_038 = 0.2168J3_9DFE_007:J3_8P9A_049 = 0.3551J3_9DFE_007:J3_4WF9_002 = 0.1865J3_7A0S_004:J3_9DFE_007 = 0.1376J3_7A0S_004:J3_7A0S_004 = 0J3_7A0S_004:J3_4V9F_002 = 0.1317J3_7A0S_004:J3_5J7L_038 = 0.1336J3_7A0S_004:J3_8P9A_049 = 0.1557J3_7A0S_004:J3_4WF9_002 = 0.1324J3_4V9F_002:J3_9DFE_007 = 0.1809J3_4V9F_002:J3_7A0S_004 = 0.1317J3_4V9F_002:J3_4V9F_002 = 0J3_4V9F_002:J3_5J7L_038 = 0.0893J3_4V9F_002:J3_8P9A_049 = 0.1006J3_4V9F_002:J3_4WF9_002 = 0.1107J3_5J7L_038:J3_9DFE_007 = 0.2168J3_5J7L_038:J3_7A0S_004 = 0.1336J3_5J7L_038:J3_4V9F_002 = 0.0893J3_5J7L_038:J3_5J7L_038 = 0J3_5J7L_038:J3_8P9A_049 = 0.0814J3_5J7L_038:J3_4WF9_002 = 0.0919J3_8P9A_049:J3_9DFE_007 = 0.3551J3_8P9A_049:J3_7A0S_004 = 0.1557J3_8P9A_049:J3_4V9F_002 = 0.1006J3_8P9A_049:J3_5J7L_038 = 0.0814J3_8P9A_049:J3_8P9A_049 = 0J3_8P9A_049:J3_4WF9_002 = 0.0984J3_4WF9_002:J3_9DFE_007 = 0.1865J3_4WF9_002:J3_7A0S_004 = 0.1324J3_4WF9_002:J3_4V9F_002 = 0.1107J3_4WF9_002:J3_5J7L_038 = 0.0919J3_4WF9_002:J3_8P9A_049 = 0.0984J3_4WF9_002:J3_4WF9_002 = 0J3_9DFE_007J3_7A0S_004J3_4V9F_002J3_5J7L_038J3_8P9A_049J3_4WF9_002Discrepancy0.000.100.200.30
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