Motif J3_69230.3 Version J3_69230.3 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | break | 18 | 19 | 20 | 21 | 22 | 1-22 | 2-14 | 3-13 | 3-15 | 4-12 | 8-9 | 16-19 | 16-20 | 17-18 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9H3G_005 | 9H3G | 0.4293 | 4 | A | LSU rRNA | C | 111 | A | 112 | G | 113 | C | 114 | U | 116 | G | 117 | A | 120 | A | 121 | * | U | 147 | A | 148 | G | 149 | PSU | 150 | C | 151 | U | 152 | G | 153 | A | 155 | G | 156 | * | C | 260 | U | 261 | A | 262 | C | 263 | G | 264 | cWW | tHW | ntWW | cWW | tHS | cWW | |||
| 2 | J3_9PN5_001 | 9PN5 | 0.0933 | 4 | A1 | LSU rRNA | C | 113 | A | 114 | A | 115 | A | 116 | U | 118 | U | 119 | A | 122 | A | 123 | * | U | 149 | A | 150 | A | 151 | U | 152 | U | 153 | U | 154 | G | 155 | A | 157 | G | 158 | * | C | 263 | G | 264 | A | 265 | A | 266 | G | 267 | cWW | tHW | ntWW | ntHH | cWW | tHS | cWW | ||
| 3 | J3_8OI5_001 | 8OI5 | 0.0000 | 4 | 1 | LSU rRNA | C | 112 | A | 113 | A | 114 | A | 115 | U | 117 | U | 118 | A | 121 | A | 122 | * | U | 148 | A | 149 | A | 150 | U | 151 | U | 152 | U | 153 | G | 154 | A | 156 | G | 157 | * | C | 263 | G | 264 | A | 265 | C | 266 | G | 267 | cWW | tHW | cWW | tHS | cWW | ||||
| 4 | J3_9AXU_001 | 9AXU | 0.1167 | 4 | 2 | LSU rRNA | C | 113 | A | 114 | A | 115 | A | 116 | U | 118 | U | 119 | A | 122 | A | 123 | * | U | 155 | A | 156 | A | 157 | U | 158 | U | 159 | U | 160 | C | 161 | A | 163 | G | 164 | * | C | 271 | G | 272 | A | 273 | A | 274 | G | 275 | cWW | tHW | ncWB | ntHW | cWW | tHS | ncWB | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCUUGAAAA*UAG(PSU)CUGGAG*CUACG | 1 |
| CAAAUUUGAAA*UAAUUUGGAG*CGAAG | 1 |
| CAAAUUUGAAA*UAAUUUGAAG*CGACG | 1 |
| CAAAUUUGAAA*UAAUUUCAAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCUUGAAA*AG(PSU)CUGGA*UAC | 1 |
| AAAUUUGAA*AAUUUGGA*GAA | 1 |
| AAAUUUGAA*AAUUUGAA*GAC | 1 |
| AAAUUUGAA*AAUUUCAA*GAA | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.21 | Max 0.44
Coloring options: