Motif J3_70759.1 Version J3_70759.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 5-8 | 6-7 | 11-12 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_4V9F_016 | 4V9F | 0.0909 | 0 | 0 | LSU rRNA | C | 1450 | C | 1451 | G | 1452 | G | 1453 | U | 1454 | C | 1455 | * | G | 1490 | G | 1491 | A | 1492 | A | 1493 | A | 1494 | * | U | 1511 | G | 1512 | cWW | ntHS | cWW | cWW |
2 | J3_8C3A_052 | 8C3A | 0.0000 | 0 | 1 | LSU rRNA | U | 1522 | C | 1523 | G | 1524 | A | 1525 | U | 1526 | C | 1527 | * | G | 1587 | G | 1588 | A | 1589 | A | 1590 | U | 1591 | * | A | 1608 | A | 1609 | cWW | ntHS | cWW | cWW |
3 | J3_5TBW_010 | 5TBW | 0.0837 | 0 | 1 | LSU rRNA | U | 1526 | C | 1527 | G | 1528 | A | 1529 | U | 1530 | C | 1531 | * | G | 1591 | G | 1592 | A | 1593 | A | 1594 | U | 1595 | * | A | 1612 | A | 1613 | ntHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCGAUC*GGAAU*AA | 2 |
CCGGUC*GGAAA*UG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CGAU*GAA* | 2 |
CGGU*GAA* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Heat map statistics
- Min 0.08 | Avg 0.06 | Max 0.10
Coloring options: