Motif J3_92134.1 Version J3_92134.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | break | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 1-26 | 2-24 | 2-25 | 3-10 | 4-8 | 4-22 | 5-9 | 6-19 | 8-21 | 9-17 | 9-22 | 10-23 | 11-24 | 12-23 | 13-14 | 15-16 | 17-21 | 18-22 | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7A0S_015 | 7A0S | 0.0955 | 2 | X | LSU rRNA | G | 506 | A | 507 | G | 508 | U | 509 | G | 510 | A | 511 | A | 512 | A | 513 | A | 515 | G | 516 | A | 517 | C | 519 | C | 520 | * | G | 30 | C | 31 | * | G | 485 | U | 486 | G | 487 | A | 488 | A | 489 | A | 490 | A | 491 | G | 492 | A | 493 | A | 494 | C | 495 | cWW | cWS | tSH | cWB | tWH | ncSs | ntSH | tHH | tWW | csS | tWW | tSS | ntHH | cWW | cWW | cWW | tWH | ntSH |
| 2 | J3_5J7L_066 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | G | 496 | A | 497 | G | 498 | U | 499 | G | 500 | A | 501 | A | 502 | A | 503 | A | 505 | G | 506 | A | 507 | C | 509 | C | 510 | * | G | 30 | C | 31 | * | G | 474 | C | 475 | G | 476 | A | 477 | A | 478 | A | 479 | A | 480 | G | 481 | A | 482 | A | 483 | C | 484 | cWW | cWS | tSH | cWB | tWH | cSs | tSH | tHH | tWW | ncsS | tWW | tSS | ntHH | cWW | cWW | cWW | ntWH | tSH |
| 3 | J3_9DFE_002 | 9DFE | 0.0843 | 2 | 1A | LSU rRNA | G | 496 | A | 497 | G | 498 | U | 499 | G | 500 | A | 501 | A | 502 | A | 503 | A | 505 | G | 506 | A | 507 | C | 509 | C | 510 | * | G | 30 | C | 31 | * | G | 474 | U | 475 | G | 476 | A | 477 | A | 478 | A | 479 | A | 480 | G | 481 | A | 482 | A | 483 | C | 484 | cWW | cWS | tSH | cWB | tWH | cSs | tSH | tHH | tWW | csS | tWW | tSS | ntHH | cWW | cWW | cWW | tWH | tSH |
| 4 | J3_4WF9_011 | 4WF9 | 0.1087 | 2 | X | LSU rRNA | G | 541 | A | 542 | G | 543 | U | 544 | G | 545 | A | 546 | A | 547 | A | 548 | A | 550 | G | 551 | A | 552 | C | 554 | C | 555 | * | G | 30 | C | 31 | * | G | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | A | 526 | G | 527 | C | 528 | A | 529 | C | 530 | cWW | cWS | tSH | cWB | tWH | ntSH | tHH | tWW | csS | tWW | tSS | cWW | cWW | cWW | tWH | ntSH | ||
| 5 | J3_8P9A_047 | 8P9A | 0.1800 | 2 | AR+AT | LSU rRNA + 5.8S rRNA | G | 390 | A | 391 | G | 392 | U | 393 | G | 394 | A | 395 | A | 396 | A | 397 | A | 399 | G | 400 | U | 401 | C | 403 | G | 404 | * | C | 19 | U | 20 | * | A | 369 | U | 370 | G | 371 | A | 372 | A | 373 | A | 374 | A | 375 | G | 376 | A | 377 | A | 378 | C | 379 | cWW | cWS | tSH | cWB | tWH | ncSs | tSH | tHH | tWW | csS | tWW | tSS | cWW | cWW | cWW | tWH | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GUGAAAAGAAC*GAGUGAAAGAGAACC | 1 |
| GC*GCGAAAAGAAC*GAGUGAAAAAGAACC | 1 |
| GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC | 1 |
| GC*GUGAAAAGCAC*GAGUGAAAUAGAACC | 1 |
| AUGAAAAGAAC*GAGUGAAAAAGUACG*CU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UGAAAAGAA*AGUGAAAGAGAAC | 1 |
| *CGAAAAGAA*AGUGAAAAAGAAC | 1 |
| *UGAAAAGAA*AGUGAAAUAGAGC | 1 |
| *UGAAAAGCA*AGUGAAAUAGAAC | 1 |
| UGAAAAGAA*AGUGAAAAAGUAC* | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.12 | Max 0.22
Coloring options: