Motif J4_61885.2 Version J4_61885.2 of this group appears in releases 3.18 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | break | 21 | 22 | 1-2 | 1-22 | 3-4 | 6-13 | 8-11 | 9-10 | 12-13 | 20-21 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_6CZR_013 | 6CZR | 0.0823 | 1 | 1a | SSU rRNA | G | 559 | G | 560 | G | 561 | * | C | 748 | G | 749 | A | 750 | A | 751 | A | 752 | G | 753 | * | C | 794 | C | 795 | C | 796 | U | 797 | A | 798 | A | 800 | C | 801 | G | 802 | A | 803 | U | 804 | G | 805 | * | C | 857 | C | 858 | cWW | cWW | ntHW | cWW | cWW | |||
| 2 | J4_4LFB_003 | 4LFB | 0.0000 | 1 | A | SSU rRNA | G | 575 | G | 576 | G | 577 | * | C | 764 | G | 765 | A | 766 | A | 767 | A | 768 | G | 769 | * | C | 810 | C | 811 | C | 812 | U | 813 | A | 814 | A | 816 | C | 817 | G | 818 | A | 819 | U | 820 | G | 821 | * | C | 879 | C | 880 | ncSH | cWW | cWW | tHW | ncWW | cWW | cWW | |
| 3 | J4_5J7L_003 | 5J7L | 0.0853 | 1 | AA | SSU rRNA | G | 575 | C | 576 | G | 577 | * | C | 764 | G | 765 | A | 766 | A | 767 | A | 768 | G | 769 | * | C | 810 | C | 811 | G | 812 | U | 813 | A | 814 | A | 816 | C | 817 | G | 818 | A | 819 | U | 820 | G | 821 | * | C | 879 | C | 880 | cWW | cWW | tHW | ncWW | cWW | ncSH | cWW | |
| 4 | J4_4V88_024 | 4V88 | 0.1309 | 1 | A6 | SSU rRNA | A | 622 | A | 623 | G | 624 | * | C | 975 | G | 976 | A | 977 | A | 978 | A | 979 | G | 980 | * | C | 1021 | C | 1022 | A | 1023 | U | 1024 | A | 1025 | A | 1027 | C | 1028 | U | 1029 | A | 1030 | U | 1031 | G | 1032 | * | U | 1103 | U | 1104 | cWW | cWW | tHW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGG*CGAAAG*CCCUAAACGAUG*CC | 2 |
| GCG*CGAAAG*CCGUAAACGAUG*CC | 1 |
| AAG*CGAAAG*CCAUAAACUAUG*UU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GAAA*CCUAAACGAU* | 2 |
| C*GAAA*CGUAAACGAU* | 1 |
| A*GAAA*CAUAAACUAU* | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
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- (4)
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-tHW-F-F-F-F-F-cWW-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.08 | Max 0.15
Coloring options: