Motif J4_61885.3 Version J4_61885.3 of this group appears in releases 3.80 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | break | 20 | 21 | 1-21 | 2-3 | 5-12 | 7-10 | 8-9 | 11-12 | 19-20 | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_6CZR_013 | 6CZR | 0.1092 | 2 | 1a | SSU rRNA | G | 559 | G | 561 | * | C | 748 | G | 749 | A | 750 | A | 751 | A | 752 | G | 753 | * | C | 794 | C | 795 | C | 796 | U | 797 | A | 798 | A | 800 | C | 801 | G | 802 | A | 803 | U | 804 | G | 805 | * | C | 857 | C | 858 | cWW | cWW | ntHW | cWW | cWW | ||
| 2 | J4_4LFB_003 | 4LFB | 0.0853 | 2 | A | SSU rRNA | G | 575 | G | 577 | * | C | 764 | G | 765 | A | 766 | A | 767 | A | 768 | G | 769 | * | C | 810 | C | 811 | C | 812 | U | 813 | A | 814 | A | 816 | C | 817 | G | 818 | A | 819 | U | 820 | G | 821 | * | C | 879 | C | 880 | cWW | cWW | tHW | ncWW | cWW | cWW | |
| 3 | J4_5J7L_003 | 5J7L | 0.0000 | 2 | AA | SSU rRNA | G | 575 | G | 577 | * | C | 764 | G | 765 | A | 766 | A | 767 | A | 768 | G | 769 | * | C | 810 | C | 811 | G | 812 | U | 813 | A | 814 | A | 816 | C | 817 | G | 818 | A | 819 | U | 820 | G | 821 | * | C | 879 | C | 880 | cWW | cWW | tHW | ncWW | cWW | ncSH | cWW |
| 4 | J4_8C3A_022 | 8C3A | 0.1078 | 2 | CM | SSU rRNA | A | 620 | G | 622 | * | C | 960 | G | 961 | A | 962 | A | 963 | A | 964 | G | 965 | * | C | 1006 | C | 1007 | A | 1008 | U | 1009 | A | 1010 | A | 1012 | C | 1013 | U | 1014 | A | 1015 | U | 1016 | G | 1017 | * | U | 1088 | U | 1089 | cWW | cWW | tHW | ncWW | cWW | cWW | |
| 5 | J4_4V88_024 | 4V88 | 0.1107 | 2 | A6 | SSU rRNA | A | 622 | G | 624 | * | C | 975 | G | 976 | A | 977 | A | 978 | A | 979 | G | 980 | * | C | 1021 | C | 1022 | A | 1023 | U | 1024 | A | 1025 | A | 1027 | C | 1028 | U | 1029 | A | 1030 | U | 1031 | G | 1032 | * | U | 1103 | U | 1104 | cWW | cWW | tHW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGG*CGAAAG*CCCUAAACGAUG*CC | 2 |
| AAG*CGAAAG*CCAUAAACUAUG*UU | 2 |
| GCG*CGAAAG*CCGUAAACGAUG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GAAA*CCUAAACGAU* | 2 |
| A*GAAA*CAUAAACUAU* | 2 |
| C*GAAA*CGUAAACGAU* | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.09 | Max 0.15
Coloring options: