Motif J4_69051.1 Version J4_69051.1 of this group appears in releases 3.3 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	break		11		12	break		13		14		15		16		17		18		19		20	1-20	2-3	3-7	3-8	4-19	5-6	9-18	10-11	12-13
1	J4_4IOA_004	4IOA	0.1799	1	X	LSU rRNA	G	1323	G	1324	U	1325	U	1326	C	1327	*	G	1351	G	1352	A	1353	A	1355	G	1356	*	C	1417	C	1418	*	G	1613	C	1614	C	1615	C	1616	G	1617	U	1618	A	1619	C	1620	cWW			ntWW	cWW	cWW	tHW	cWW	cWW
2	J4_4WF9_005	4WF9	0.1569	1	X	LSU rRNA	G	1347	U	1348	U	1349	U	1350	C	1351	*	G	1375	G	1376	U	1377	A	1379	G	1380	*	C	1441	C	1442	*	G	1641	C	1642	C	1643	C	1644	G	1645	U	1646	A	1647	C	1648	cWW		ntSW		cWW	cWW	tHW	cWW	cWW
3	J4_4Y4O_017	4Y4O	0.1377	1	2A	LSU rRNA	G	1310	G	1311	U	1312	U	1313	C	1314	*	G	1338	G	1339	U	1340	A	1342	G	1343	*	C	1404	U	1405	*	A	1597	C	1598	C	1599	C	1600	G	1601	U	1602	A	1603	C	1604	cWW	cSH			cWW	cWW	tHW	cWW	cWW
4	J4_5TBW_004	5TBW	0.0000	1	1	LSU rRNA	G	1492	G	1493	U	1494	U	1495	C	1496	*	G	1520	G	1521	U	1522	A	1524	G	1525	*	C	1614	C	1615	*	G	1829	G	1830	U	1831	C	1832	G	1833	U	1834	A	1835	C	1836	cWW				ncHW	cWW	tHW	cWW	cWW
5	J4_4V9F_004	4V9F	0.0758	1	0	LSU rRNA	G	1416	G	1417	U	1418	U	1419	C	1420	*	G	1444	G	1445	U	1446	A	1448	G	1449	*	C	1513	C	1514	*	G	1672	U	1673	C	1674	C	1675	G	1676	U	1677	A	1678	C	1679	cWW				cWW	cWW	tHW	cWW	cWW
6	J4_5J7L_022	5J7L	0.1250	1	DA	LSU rRNA	G	1310	G	1311	U	1312	U	1313	C	1314	*	G	1338	G	1339	U	1340	A	1342	G	1343	*	C	1404	U	1405	*	A	1597	A	1598	U	1599	C	1600	G	1601	U	1602	A	1603	C	1604	cWW				cWW	cWW	tHW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUUCGGAAAGCC*GCCCGUAC	1
GUUUCGGUUAGCC*GCCCGUAC	1
GGUUCGGUUAGCU*ACCCGUAC	1
GGUUCGGUUAGCC*GGUCGUAC	1
GGUUCGGUUAGCC*GUCCGUAC	1
GGUUCGGUGAGCU*AAUCGUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUGAAA*CCCGUA	1
UUUGUUA*CCCGUA	1
GUUGUUA*CCCGUA	1
GUUGUUA*GUCGUA	1
GUUGUUA*UCCGUA	1
GUUGUGA*AUCGUA	1

Release history

Release	3.2	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2018-02-09	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-F-cWW-F-F-tWH-F-F-F-cWW-cWW-cWW-F-F
Heat map statistics: Min 0.08 | Avg 0.12 | Max 0.22

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Coloring options: Nucleotide numbers

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