#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 10break 11 12break 13 14 15 16 17 18 19 201-202-33-73-84-195-69-1810-1112-13
1 J4_5J7L_0225J7L0.14061DA LSU rRNAG1310G1311U1312U1313C1314*G1338G1339U1340A1342G1343*C1404U1405*A1597A1598U1599C1600G1601U1602A1603C1604cWWcWWcWWtHWcWWcWW
2 J4_4V9F_0044V9F0.138610 LSU rRNAG1416G1417U1418U1419C1420*G1444G1445U1446A1448G1449*C1513C1514*G1672U1673C1674C1675G1676U1677A1678C1679cWWcWWcWWtHWcWWcWW
3 J4_5TBW_0045TBW0.134411 LSU rRNAG1492G1493U1494U1495C1496*G1520G1521U1522A1524G1525*C1614C1615*G1829G1830U1831C1832G1833U1834A1835C1836cWWncHWcWWtHWcWWcWW
4 J4_7RQB_0047RQB0.000011A LSU rRNAG1310G1311U1312U1313C1314*G1338G1339U1340A1342G1343*C1404U1405*A1597C1598C1599C1600G1601U1602A1603C1604cWWcSHcWWcWWtHWcWWcWW
5 J4_4WF9_0054WF90.09481X LSU rRNAG1347U1348U1349U1350C1351*G1375G1376U1377A1379G1380*C1441C1442*G1641C1642C1643C1644G1645U1646A1647C1648cWWntSWcWWcWWtHWcWWcWW
6 J4_7A0S_0057A0S0.14441X LSU rRNAG1323G1324U1325U1326C1327*G1351G1352A1353A1355G1356*C1417C1418*G1613C1614C1615C1616G1617U1618A1619C1620cWWntWWcWWcWWntHWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUUC*GGUGAG*CU*AAUCGUAC1
GGUUC*GGUUAG*CC*GUCCGUAC1
GGUUC*GGUUAG*CC*GGUCGUAC1
GGUUC*GGUUAG*CU*ACCCGUAC1
GUUUC*GGUUAG*CC*GCCCGUAC1
GGUUC*GGAAAG*CC*GCCCGUAC1
Non-Watson-Crick part of the motif
SequenceCounts
GUU*GUGA**AUCGUA1
GUU*GUUA**UCCGUA1
GUU*GUUA**GUCGUA1
GUU*GUUA**CCCGUA1
UUU*GUUA**CCCGUA1
GUU*GAAA**CCCGUA1

Release history

Release3.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.86
Date2022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-17
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Basepair signature
    cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.12 | Max 0.22
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