Motif J4_69051.5 Version J4_69051.5 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 1-20 | 2-3 | 3-7 | 3-8 | 4-19 | 5-6 | 9-18 | 10-11 | 12-13 | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8P9A_015 | 8P9A | 0.0821 | 1 | AR | LSU rRNA | G | 1492 | G | 1493 | U | 1494 | U | 1495 | C | 1496 | * | G | 1520 | G | 1521 | U | 1522 | A | 1524 | G | 1525 | * | C | 1614 | C | 1615 | * | G | 1829 | G | 1830 | U | 1831 | C | 1832 | G | 1833 | U | 1834 | A | 1835 | C | 1836 | cWW | ncHW | cWW | tHW | cWW | cWW | |||
| 2 | J4_4V9F_004 | 4V9F | 0.0000 | 1 | 0 | LSU rRNA | G | 1416 | G | 1417 | U | 1418 | U | 1419 | C | 1420 | * | G | 1444 | G | 1445 | U | 1446 | A | 1448 | G | 1449 | * | C | 1513 | C | 1514 | * | G | 1672 | U | 1673 | C | 1674 | C | 1675 | G | 1676 | U | 1677 | A | 1678 | C | 1679 | cWW | cWW | cWW | tHW | cWW | cWW | |||
| 3 | J4_5J7L_022 | 5J7L | 0.1139 | 1 | DA | LSU rRNA | G | 1310 | G | 1311 | U | 1312 | U | 1313 | C | 1314 | * | G | 1338 | G | 1339 | U | 1340 | A | 1342 | G | 1343 | * | C | 1404 | U | 1405 | * | A | 1597 | A | 1598 | U | 1599 | C | 1600 | G | 1601 | U | 1602 | A | 1603 | C | 1604 | cWW | cWW | cWW | tHW | cWW | cWW | |||
| 4 | J4_9DFE_004 | 9DFE | 0.1535 | 1 | 1A | LSU rRNA | G | 1310 | G | 1311 | U | 1312 | U | 1313 | C | 1314 | * | G | 1338 | G | 1339 | U | 1340 | A | 1342 | G | 1343 | * | C | 1404 | U | 1405 | * | A | 1597 | C | 1598 | C | 1599 | C | 1600 | G | 1601 | U | 1602 | A | 1603 | C | 1604 | cWW | cSH | cWW | cWW | tHW | cWW | cWW | ||
| 5 | J4_4WF9_005 | 4WF9 | 0.1691 | 1 | X | LSU rRNA | G | 1347 | U | 1348 | U | 1349 | U | 1350 | C | 1351 | * | G | 1375 | G | 1376 | U | 1377 | A | 1379 | G | 1380 | * | C | 1441 | C | 1442 | * | G | 1641 | C | 1642 | C | 1643 | C | 1644 | G | 1645 | U | 1646 | A | 1647 | C | 1648 | cWW | ntSW | cWW | cWW | tHW | cWW | cWW | ||
| 6 | J4_7A0S_005 | 7A0S | 0.1802 | 1 | X | LSU rRNA | G | 1323 | G | 1324 | U | 1325 | U | 1326 | C | 1327 | * | G | 1351 | G | 1352 | A | 1353 | A | 1355 | G | 1356 | * | C | 1417 | C | 1418 | * | G | 1613 | C | 1614 | C | 1615 | C | 1616 | G | 1617 | U | 1618 | A | 1619 | C | 1620 | cWW | ntWW | cWW | cWW | ntHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUC*GGUUAG*CC*GGUCGUAC | 1 |
| GGUUC*GGUUAG*CC*GUCCGUAC | 1 |
| GGUUC*GGUGAG*CU*AAUCGUAC | 1 |
| GGUUC*GGUUAG*CU*ACCCGUAC | 1 |
| GUUUC*GGUUAG*CC*GCCCGUAC | 1 |
| GGUUC*GGAAAG*CC*GCCCGUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUU*GUUA**GUCGUA | 1 |
| GUU*GUUA**UCCGUA | 1 |
| GUU*GUGA**AUCGUA | 1 |
| GUU*GUUA**CCCGUA | 1 |
| UUU*GUUA**CCCGUA | 1 |
| GUU*GAAA**CCCGUA | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.13 | Max 0.22
Coloring options: