Motif J5_59910.2 Version J5_59910.2 of this group appears in releases 3.18 to 3.79

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9		10		11	break		12		13		14	break		15		16		17	break		18		19		20		21	1-21	3-6	3-8	4-5	10-13	11-12	11-20	12-20	14-15	16-19	17-18
1	J5_6CZR_021	6CZR	0.1202	2	1a	SSU rRNA	C	59	A	60	A	61	G	62	*	C	100	G	101	G	102	C	104	G	105	G	106	G	107	*	C	310	A	311	G	312	*	C	333	A	334	C	335	*	G	346	G	347	A	349	G	350	cWW		ntHW	ncWW	ncWW	cWW	csS	ntsS	cWW	cWW	cWW
2	J5_4LFB_002	4LFB	0.0000	2	A	SSU rRNA	C	58	A	59	A	60	G	61	*	C	106	G	107	G	108	C	110	G	111	G	112	G	113	*	C	314	A	315	G	316	*	C	337	A	338	C	339	*	G	350	G	351	A	353	G	354	cWW	ntSs		cWW	cWW	cWW	csS	ntsS	cWW	cWW	cWW
3	J5_5J7L_003	5J7L	0.0998	2	AA	SSU rRNA	C	58	A	59	A	60	G	61	*	C	106	G	107	G	108	C	110	G	111	G	112	G	113	*	C	314	A	315	C	316	*	G	337	A	338	C	339	*	G	350	G	351	A	353	G	354	cWW	ntSs		cWW	cWW	cWW	csS	ntsS	cWW	cWW	cWW
4	J5_4V88_019	4V88	0.1520	2	A6	SSU rRNA	C	54	A	55	U	56	G	57	*	C	90	G	91	A	92	U	94	G	95	G	96	C	97	*	G	386	A	387	G	388	*	C	409	A	410	C	411	*	G	422	G	423	A	425	G	426	cWW	ntWS		cWW	cWW	cWW	csS	tsS	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAGCGGACGGGCAGCACGGCAG	2
CAAGCGGACGGGCACGACGGCAG	1
CAUGCGAAUGGCGAGCACGGCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAGGACGGAAGCA	3
AUGAAUGGAAGCA	1

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-09-14	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Heat map statistics: Min 0.10 | Avg 0.11 | Max 0.18

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.0878 s