Motif J5_83685.2 Version J5_83685.2 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | break | 24 | 25 | 26 | 27 | 28 | 29 | break | 30 | 31 | 32 | 33 | 1-33 | 5-12 | 6-11 | 6-19 | 7-8 | 8-10 | 9-12 | 11-19 | 13-18 | 13-22 | 14-17 | 14-18 | 14-22 | 15-16 | 18-22 | 23-24 | 28-32 | 29-30 | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8GLP_004 | 8GLP | 0.1733 | 7 | L5 | LSU rRNA | A | 3903 | G | 3904 | A | 3905 | A | 3906 | G | 3907 | C | 3909 | C | 3910 | * | OMG | 4392 | G | 4393 | U | 4395 | A | 4396 | A | 4397 | C | 4398 | U | 4399 | G | 4400 | * | C | 4444 | U | 4445 | U | 4446 | 5MC | 4447 | G | 4448 | A | 4449 | U | 4450 | C | 4453 | * | G | 4528 | G | 4529 | UR3 | 4530 | PSU | 4532 | A | 4533 | G | 4534 | * | PSU | 4552 | A | 4553 | G | 4554 | U | 4557 | cWW | ncWW | cWW | ntWS | cWW | ntSW | tHH | tHW | ncWw | ncwW | cWW | cWW | tHS | cWW | ||||
| 2 | J5_8OI5_005 | 8OI5 | 0.0598 | 7 | 1 | LSU rRNA | A | 2377 | G | 2378 | A | 2379 | A | 2380 | G | 2381 | C | 2383 | C | 2384 | * | G | 2787 | G | 2788 | U | 2790 | A | 2791 | A | 2792 | C | 2793 | U | 2794 | G | 2795 | * | C | 2839 | U | 2840 | U | 2841 | C | 2842 | G | 2843 | A | 2844 | U | 2845 | C | 2848 | * | G | 2923 | G | 2924 | U | 2925 | U | 2927 | A | 2928 | G | 2929 | * | U | 2947 | A | 2948 | G | 2949 | U | 2952 | cWW | ncWW | cWW | ntWS | cWW | ntSW | ntHH | ntHW | cWW | ncSW | cWW | tHS | cWW | |||||
| 3 | J5_9H3G_005 | 9H3G | 0.0380 | 7 | A | LSU rRNA | A | 2397 | G | 2398 | A | 2399 | A | 2400 | G | 2401 | C | 2403 | C | 2404 | * | OMG | 2814 | G | 2815 | U | 2817 | A | 2818 | A | 2819 | C | 2820 | U | 2821 | G | 2822 | * | C | 2866 | U | 2867 | U | 2868 | 5MC | 2869 | G | 2870 | A | 2871 | U | 2872 | C | 2875 | * | G | 2950 | G | 2951 | UR3 | 2952 | PSU | 2954 | A | 2955 | G | 2956 | * | PSU | 2974 | A | 2975 | G | 2976 | U | 2979 | cWW | ncWW | cWW | ntWS | cWW | ntSW | tHH | tHW | ncWW | cWW | ncSH | cWW | tHS | cWW | ||||
| 4 | J5_9PN5_005 | 9PN5 | 0.0000 | 7 | A1 | LSU rRNA | A | 2399 | G | 2400 | A | 2401 | A | 2402 | G | 2403 | C | 2405 | C | 2406 | * | G | 2815 | G | 2816 | U | 2818 | A | 2819 | A | 2820 | C | 2821 | U | 2822 | G | 2823 | * | C | 2867 | U | 2868 | U | 2869 | 5MC | 2870 | G | 2871 | A | 2872 | U | 2873 | C | 2876 | * | G | 2951 | G | 2952 | U | 2953 | U | 2955 | A | 2956 | G | 2957 | * | PSU | 2975 | A | 2976 | G | 2977 | U | 2980 | cWW | ncWW | cWW | ntWS | cWW | ntSW | tHH | tHW | cWW | ncSH | cWW | tHS | cWW | |||||
| 5 | J5_9AXU_005 | 9AXU | 0.2920 | 7 | 2 | LSU rRNA | A | 2487 | G | 2488 | A | 2489 | A | 2490 | G | 2491 | C | 2493 | C | 2494 | * | G | 2910 | G | 2911 | U | 2913 | A | 2914 | A | 2915 | C | 2916 | U | 2917 | G | 2918 | * | C | 2962 | U | 2963 | U | 2964 | C | 2965 | G | 2966 | A | 2967 | U | 2968 | C | 2971 | * | G | 3046 | G | 3047 | U | 3048 | U | 3050 | A | 3051 | G | 3052 | * | U | 3070 | A | 3071 | G | 3072 | U | 3075 | cWW | cWW | ntWS | cWW | ntSW | ntHH | tHW | cWW | cwW | cWW | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU | 2 |
| AGAAGACC*OMGGAUAACUG*CUU(5MC)GAUGUC*GG(UR3)(PSU)(PSU)AG*PSUAGUUU | 1 |
| AGAAGACC*OMGGAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*PSUAGUUU | 1 |
| AGAAGACC*GGAUAACUG*CUU(5MC)GAUGUC*GGUUUAG*PSUAGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAC*GAUAACU*UUCGAUGU*GUUUA*AGUU | 2 |
| GAAGAC*GAUAACU*UU(5MC)GAUGU*G(UR3)(PSU)(PSU)A*AGUU | 1 |
| GAAGAC*GAUAACU*UU(5MC)GAUGU*G(UR3)U(PSU)A*AGUU | 1 |
| GAAGAC*GAUAACU*UU(5MC)GAUGU*GUUUA*AGUU | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-F-tHS-F-F-F-cWW-F-cWW-cWW-F-F-tHH-F-F-cWW-tHW-F-F-F-F-F-cWW-F-F
- Heat map statistics
- Min 0.04 | Avg 0.16 | Max 0.35
Coloring options: