Motif J6_45299.2 Version J6_45299.2 of this group appears in releases 3.54 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)		1		2	break		3		4		5		6		7	break		8		9		10		11		12		13		14		15		16		17	break		18		19		20		21		22	break		23		24		25		26		27	break		28		29		30		31		32		33		34		35	1-5	1-35	2-3	6-9	6-35	7-8	7-9	7-34	8-10	10-33	13-21	13-32	14-20	15-29	16-19	17-18	20-31	21-24	21-32	22-23	24-31	26-29	27-28
1	J6_4WF9_001	4WF9	0.1864	2	X	G	45	C	46	*	G	181	C	182	A	183	A	185	C	186	*	G	217	G	218	A	219	A	220	G	221	A	222	G	223	A	224	A	225	G	227	*	C	234	G	235	A	236	U	237	U	238	*	A	265	A	266	G	267	A	268	G	269	*	C	472	U	473	A	474	A	475	A	476	U	477	A	478	C	479	tSW	cWW	cWW	cWW	csS	cWW		cSs	ncsS	tHW	csS		cSs	tHW	ntHS	cWW	tWW	tHS	tWW	cWW	ncSs	ntHS	cWW
2	J6_5J7L_003	5J7L	0.1842	1	DA	G	45	G	46	*	C	179	G	180	A	181	A	182	C	183	*	G	214	G	215	A	216	A	217	A	218	A	219	G	220	A	221	A	222	U	224	*	A	231	G	232	A	233	U	234	U	235	*	A	262	G	263	C	264	A	265	G	266	*	C	426	U	427	A	428	A	429	A	430	U	431	A	432	C	433	ntSW	cWW	cWW	cWW	csS	cWW		cSs	ncsS	tHW	csS		cSs	tHW	tHS	cWW	tWW	ntHS	tWW	cWW	ncSs	tSs	cWW
3	J6_4V9F_001	4V9F	0.1024	1	0	G	41	C	42	*	G	149	G	150	A	151	A	152	C	153	*	G	184	G	185	A	186	A	187	C	188	A	189	G	190	A	191	A	192	A	194	*	U	202	G	203	A	204	U	205	G	206	*	U	233	A	234	C	235	A	236	G	237	*	C	433	U	434	A	435	A	436	A	437	C	438	A	439	C	440		cWW	cWW	cWW	csS	cWW		cSs	ncsS		csS		cSs	tHW	tHS	cWW	tWW	ntHS	tWW	cWW	ncSs	tSs	cWW
4	J6_7RQB_001	7RQB	0.0000	1	1A	G	44	C	45	*	G	179	G	180	A	181	A	182	C	183	*	G	214	G	215	A	216	G	217	A	218	G	219	G	220	A	221	A	222	G	224	*	C	231	G	232	A	233	C	234	U	235	*	A	262	C	263	C	264	A	265	G	266	*	C	426	U	427	A	428	A	429	G	430	U	431	A	432	C	433		cWW	cWW	cWW	csS	cWW	ncWW	cSs	csS	tHW	csS	ntSH	cSs	tHW	tHS	cWW	tWW		tWW	cWW		tSs	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCGCACACGGAAGAGAAAGCGAUUAAGAGCUAAAUAC	1
GGCGAACGGAAAAGAAAUAGAUUAGCAGCUAAAUAC	1
GCGGAACGGAACAGAAAAUGAUGUACAGCUAAACAC	1
GCGGAACGGAGAGGAAAGCGACUACCAGCUAAGUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CACAGAAGAGAAAGAUAGAUAAAUA	1
GAAGAAAAGAAAGAUGCAUAAAUA	1
GAAGAACAGAAAGAUACAUAAACA	1
GAAGAGAGGAAAGACCCAUAAGUA	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-09-14	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-cSS-cWW-cSS-tHW-F-tWW-F-tWW-cWW-F-cWW-tSS-tHW-cSS-cWW-F-F-F-tHS-cSS-cWW-cSS-tHS-cWW
Heat map statistics: Min 0.10 | Avg 0.12 | Max 0.19

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Coloring options: Nucleotide numbers

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