1LDZ | Motifs

Loop id	Location	Annotation; motif group	Mapped info
HL_1LDZ_001	1/A/14:19	GNRA	geometric HL_1RLG_002 HL_34789.5
HL_1LDZ_002	2/A/14:19	GNRA	geometric HL_2R8S_001 HL_34789.5
HL_1LDZ_003	3/A/14:19	GNRA	geometric HL_2R8S_001 HL_34789.5
HL_1LDZ_004	4/A/14:19	GNRA	geometric HL_1RLG_002 HL_34789.5
HL_1LDZ_005	5/A/14:19	GNRA	geometric HL_1MZP_001 HL_34789.5
HL_1LDZ_006	6/A/14:19	GNRA	geometric HL_3KTW_002 NA
HL_1LDZ_007	7/A/14:19	GNRA	geometric HL_4BW0_001 HL_34789.5
HL_1LDZ_008	8/A/14:19	GNRA	geometric HL_5XTM_002 HL_34789.5
HL_1LDZ_009	9/A/14:19	GNRA related	geometric HL_3OXE_002 HL_37569.4
HL_1LDZ_010	10/A/14:19	GNRA	geometric HL_4R4V_004 HL_34789.5
HL_1LDZ_011	11/A/14:19	GNRA related	geometric HL_3OXE_002 HL_37569.4
HL_1LDZ_012	12/A/14:19	GNRA	geometric HL_2R8S_001 HL_34789.5
HL_1LDZ_013	13/A/14:19	GNRA	geometric HL_2R8S_001 HL_34789.5
HL_1LDZ_014	14/A/14:19	GNRA	geometric HL_2R8S_001 HL_34789.5
HL_1LDZ_015	15/A/14:19	GNRA	geometric HL_4LFB_019 HL_34789.5
HL_1LDZ_016	16/A/14:19	GNRA	geometric HL_4BW0_001 HL_34789.5
HL_1LDZ_017	17/A/14:19	GNRA	geometric HL_3PDR_001 HL_34789.5
HL_1LDZ_018	18/A/14:19	GNRA	geometric HL_4BW0_001 HL_34789.5
HL_1LDZ_019	19/A/14:19	GNRA	geometric HL_2R8S_001 HL_34789.5
HL_1LDZ_020	20/A/14:19	GNRA	geometric HL_3KTW_002 NA
HL_1LDZ_021	21/A/14:19	GNRA	geometric HL_3KTW_002 NA
HL_1LDZ_022	22/A/14:19	GNRA	geometric HL_3PDR_001 HL_34789.5
HL_1LDZ_023	23/A/14:19	GNRA	geometric HL_1MZP_001 HL_34789.5
HL_1LDZ_024	24/A/14:19	GNRA	geometric HL_3PDR_001 HL_34789.5
HL_1LDZ_025	25/A/14:19	GNRA	geometric HL_4BW0_001 HL_34789.5

#	loop id	Problem	Sequence
	HL_1LDZ_026	Deprecated	GNRA with extra near cWW

Loop id	Location	Annotation; motif group
IL_1LDZ_001	1/A/5:10, 1/A/23:26	No text annotation
IL_1LDZ_003	2/A/5:10, 2/A/23:26	No text annotation
IL_1LDZ_004	3/A/5:10, 3/A/23:26	No text annotation
IL_1LDZ_005	4/A/5:10, 4/A/23:26	No text annotation
IL_1LDZ_006	5/A/5:10, 5/A/23:26	No text annotation
IL_1LDZ_007	6/A/5:10, 6/A/23:26	No text annotation
IL_1LDZ_008	7/A/5:10, 7/A/23:26	No text annotation
IL_1LDZ_009	8/A/5:10, 8/A/23:26	No text annotation
IL_1LDZ_010	9/A/5:10, 9/A/23:26	No text annotation
IL_1LDZ_011	10/A/5:10, 10/A/23:26	No text annotation
IL_1LDZ_012	11/A/5:10, 11/A/23:26	No text annotation
IL_1LDZ_013	12/A/5:10, 12/A/23:26	No text annotation
IL_1LDZ_014	13/A/5:10, 13/A/23:26	No text annotation
IL_1LDZ_015	14/A/5:10, 14/A/23:26	No text annotation
IL_1LDZ_017	15/A/5:10, 15/A/23:26	No text annotation
IL_1LDZ_018	16/A/5:10, 16/A/23:26	No text annotation
IL_1LDZ_019	17/A/5:10, 17/A/23:26	No text annotation
IL_1LDZ_020	18/A/5:10, 18/A/23:26	No text annotation
IL_1LDZ_021	19/A/5:10, 19/A/23:26	No text annotation
IL_1LDZ_022	20/A/5:10, 20/A/23:26	No text annotation
IL_1LDZ_023	21/A/5:10, 21/A/23:26	No text annotation
IL_1LDZ_024	22/A/5:10, 22/A/23:26	No text annotation
IL_1LDZ_025	23/A/5:10, 23/A/23:26	No text annotation
IL_1LDZ_026	24/A/5:10, 24/A/23:26	No text annotation
IL_1LDZ_027	25/A/5:10, 25/A/23:26	No text annotation

#	loop id	Problem	Sequence
	IL_1LDZ_002	complementary	Isolated non-canonical cWW pair
	IL_1LDZ_016	complementary	Isolated non-canonical cWW pair

No loops found

No problematic loops

Coloring options: Nucleotide numbers

1LDZ Hairpin, Internal, and multi-helix Junction Loop Motifs