2A64 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2A64_001 | 1/A/31:36 | No text annotation HL_37569.2 | ||
| HL_2A64_002 | 1/A/69:76 | T-loop with 2 stacked bulged bases HL_13999.2 | ||
| HL_2A64_003 | 1/A/97:108 | No text annotation HL_35113.1 | ||
| HL_2A64_005 | 1/A/288:297 | No text annotation HL_48408.1 | ||
| HL_2A64_006 | 1/A/313:324 | No text annotation HL_32279.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2A64_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2A64_002 | 1/A/51:53, 1/A/395:396 | Single bulged U IL_97561.2 | ||
| IL_2A64_003 | 1/A/66:68, 1/A/77:78 | Single bulged U IL_97561.2 | ||
| IL_2A64_008 | 1/A/191:193, 1/A/237:241 | No text annotation IL_75527.2 | ||
| IL_2A64_005 | 1/A/284:288, 1/A/297:301 | Triple sheared IL_15190.2 | ||
| IL_2A64_006 | 1/A/347:351, 1/A/378:382 | Triple sheared IL_15190.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2A64_001 | Isolated non-canonical cWW pair | ||
| IL_2A64_004 | No text annotation | ||
| IL_2A64_007 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2A64_003 | 1/A/13:15, 1/A/344:345, 1/A/384:402 | No text annotation J3_82932.1 | ||
| J3_2A64_001 | 1/A/62:63, 1/A/81:87, 1/A/249:250 | No text annotation J3_89555.1 | ||
| J3_2A64_002 | 1/A/140:142, 1/A/184:190, 1/A/242:243 | No text annotation J3_70464.1 | ||
| J4_2A64_001 | 1/A/91:92, 1/A/113:115, 1/A/136:139, 1/A/244:245 | RNase P junction J4_43687.4 | ||
| J6_2A64_001 | 1/A/21:23, 1/A/44:58, 1/A/254:258, 1/A/274:278, 1/A/307:308, 1/A/329:338 | No text annotation J6_84663.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_2A64_004 | No text annotation |
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