Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_2L2J_0011/A/19:24UNCG
geometric
HL_5Y85_004
HL_61337.5
HL_2L2J_0022/A/19:24UNCG
geometric
HL_4LFB_031
HL_61337.5
HL_2L2J_0033/A/19:24UNCG
geometric
HL_6CK5_001
HL_61337.5
HL_2L2J_0044/A/19:24UNCG
geometric
HL_6CK5_001
HL_61337.5
HL_2L2J_0055/A/19:24UNCG
geometric
HL_6CK5_001
HL_61337.5
HL_2L2J_0066/A/19:24UNCG
geometric
HL_6CK5_001
HL_61337.5
HL_2L2J_0077/A/19:24UNCG
geometric
HL_3U4M_001
HL_61337.5
HL_2L2J_0088/A/19:24UNCG
geometric
HL_5Y85_004
HL_61337.5
HL_2L2J_0099/A/19:24UNCG
geometric
HL_4LFB_031
HL_61337.5
HL_2L2J_01010/A/19:24UNCG
geometric
HL_5Y85_004
HL_61337.5
HL_2L2J_01111/A/19:24UNCG
geometric
HL_6SY6_001
HL_61337.5
HL_2L2J_01212/A/19:24UNCG
geometric
HL_5LYS_002
HL_61337.5
HL_2L2J_01313/A/19:24UNCG
geometric
HL_4LFB_031
HL_61337.5
HL_2L2J_01414/A/19:24UNCG
geometric
HL_6CK5_001
HL_61337.5
HL_2L2J_01515/A/19:24UNCG
geometric
HL_4LFB_031
HL_61337.5
HL_2L2J_01616/A/19:24UNCG
geometric
HL_6SY6_001
HL_61337.5
HL_2L2J_01717/A/19:24UNCG
geometric
HL_4LFB_031
HL_61337.5
HL_2L2J_01818/A/19:24UNCG
geometric
HL_5LYS_002
HL_61337.5
HL_2L2J_01919/A/19:24UNCG
geometric
HL_6CK5_001
HL_61337.5
HL_2L2J_02020/A/19:24UNCG
geometric
HL_5Y85_004
HL_61337.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_2L2J_0011/A/4:6,
1/A/37:39
No text annotation
geometric
IL_1L9A_003
NA
IL_2L2J_0021/A/14:16,
1/A/27:29
Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.5
IL_2L2J_0032/A/4:6,
2/A/37:39
Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_2L2J_0042/A/14:16,
2/A/27:29
Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_01003.5
IL_2L2J_0053/A/4:6,
3/A/37:39
Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_2L2J_0063/A/14:16,
3/A/27:29
Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_01003.5
IL_2L2J_0074/A/4:6,
4/A/37:39
Isolated non-canonical cWW pair
geometric
IL_5ED2_004
NA
IL_2L2J_0084/A/14:16,
4/A/27:29
Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_01003.5
IL_2L2J_0095/A/4:6,
5/A/37:39
Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.5
IL_2L2J_0105/A/14:16,
5/A/27:29
Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_01003.5
IL_2L2J_0116/A/4:6,
6/A/37:39
Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.3
IL_2L2J_0126/A/14:16,
6/A/27:29
Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_2L2J_0137/A/4:6,
7/A/37:39
Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_2L2J_0147/A/14:16,
7/A/27:29
Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.5
IL_2L2J_0158/A/4:6,
8/A/37:39
Isolated non-canonical cWW pair
geometric
IL_4E48_005
IL_01003.5
IL_2L2J_0168/A/14:16,
8/A/27:29
Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.5
IL_2L2J_0179/A/4:6,
9/A/37:39
Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.3
IL_2L2J_0189/A/14:16,
9/A/27:29
Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.5
IL_2L2J_01910/A/4:6,
10/A/37:39
Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.3
IL_2L2J_02010/A/14:16,
10/A/27:29
Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_2L2J_02111/A/4:6,
11/A/37:39
Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.3
IL_2L2J_02211/A/14:16,
11/A/27:29
Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_01003.5
IL_2L2J_02312/A/4:6,
12/A/37:39
No text annotation
geometric
IL_1L9A_003
NA
IL_2L2J_02412/A/14:16,
12/A/27:29
Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_01003.5
IL_2L2J_02513/A/4:6,
13/A/37:39
No text annotation
geometric
IL_1L9A_003
NA
IL_2L2J_02613/A/14:16,
13/A/27:29
Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.5
IL_2L2J_02714/A/4:6,
14/A/37:39
Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_2L2J_02814/A/14:16,
14/A/27:29
Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_01003.5
IL_2L2J_02915/A/4:6,
15/A/37:39
Isolated cWH basepair
geometric
IL_3SJ2_002
IL_10892.3
IL_2L2J_03015/A/14:16,
15/A/27:29
Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.5
IL_2L2J_03116/A/4:6,
16/A/37:39
Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.3
IL_2L2J_03216/A/14:16,
16/A/27:29
Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_2L2J_03317/A/4:6,
17/A/37:39
Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_2L2J_03417/A/14:16,
17/A/27:29
Isolated cWH basepair
geometric
IL_3SJ2_003
IL_10892.3
IL_2L2J_03518/A/4:6,
18/A/37:39
Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_2L2J_03618/A/14:16,
18/A/27:29
Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_01003.5
IL_2L2J_03719/A/4:6,
19/A/37:39
Isolated cWH basepair
geometric
IL_3SJ2_002
IL_10892.3
IL_2L2J_03819/A/14:16,
19/A/27:29
Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.3
IL_2L2J_03920/A/4:6,
20/A/37:39
Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_2L2J_04020/A/14:16,
20/A/27:29
Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA

Problematic loops

No problematic loops

Valid loops

No loops found

Problematic loops

No problematic loops


Coloring options:
Copyright 2026 BGSU RNA group. Page generated in 0.0817 s