3ADD Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3ADD_001 | 1/C/15:20A | tRNA D-loop HL_38901.2 | ||
| HL_3ADD_003 | 1/C/47D:47I | No text annotation HL_52953.3 | ||
| HL_3ADD_004 | 1/C/53:61 | T-loop with 2 stacked bulged bases HL_28252.9 | ||
| HL_3ADD_005 | 1/D/15:20A | tRNA D-loop | homologous HL_3ADD_001 HL_38901.2 | |
| HL_3ADD_007 | 1/D/47D:47I | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_3ADD_008 | 1/D/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3ADD_004 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3ADD_002 | No text annotation | ||
| HL_3ADD_006 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_3ADD_001 | 1/C/7:10, 1/C/25:26, 1/C/44:45, 1/C/48:50, 1/C/64:66 | No text annotation J5_30666.1 | ||
| J5_3ADD_002 | 1/D/7:10, 1/D/25:26, 1/D/44:45, 1/D/48:50, 1/D/64:66 | No text annotation | homologous J5_3ADD_001 J5_30666.1 |
Problematic loops
No problematic loops
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