5VCI Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5VCI_001 | 1/A/16:21 | GNRA HL_34789.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5VCI_001 | 1/A/1:3, 1/B/10:12 | Isolated non-canonical cWW pair IL_68118.1 | ||
| IL_5VCI_002 | 1/A/4:6, 1/B/7:9 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_5VCI_003 | 1/A/8:11, 1/B/4:5 | Major groove platform with intercalated tWH IL_94991.1 | ||
| IL_5VCI_006 | 1/A/8:12, 1/B/2:5 | Receptor of 11-nt loop-receptor motif IL_92541.1 | ||
| IL_5VCI_004 | 1/A/11:12, 1/B/2:4 | Major groove intercalation IL_46637.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5VCI_005 | Not an internal loop |
Valid loops
No loops found
Problematic loops
No problematic loops
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