5VJB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5VJB_001 | 1/A/6:11 | Pseudoknot geometry with 3' bulge | geometric HL_5NDI_002 HL_49081.1 | |
| HL_5VJB_002 | 1/B/6:11 | Pseudoknot geometry with 3' bulge | geometric HL_5NDH_001 NA | |
| HL_5VJB_003 | 1/C/6:11 | Pseudoknot geometry with 3' bulge | geometric HL_5VJ9_003 HL_49081.1 | |
| HL_5VJB_004 | 1/D/6:11 | Pseudoknot geometry with 3' bulge | geometric HL_5VJ9_003 HL_49081.1 |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5VJB_001 | Isolated cWH basepair | ||
| IL_5VJB_002 | Isolated non-canonical cWW pair | ||
| IL_5VJB_003 | Isolated non-canonical cWW pair | ||
| IL_5VJB_004 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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