RNA 3D Hub //

6SGC Summary

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Circular interaction diagram PDF
Structure title
Rabbit 80S ribosome stalled on a poly(A) tail
Authors
Release date
2019-12-04
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.8 Å
Chains
7 RNA chains from Oryctolagus cuniculus, Homo sapiens
79 other chains
Nucleic acid compounds
tRNA (Lys3), tRNA (Lys3), 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, polyA mRNA
Other compounds
Ribosomal protein L8, Ribosomal protein, uS2, uL3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, uS5, 60S ribosomal protein L6, 40S ribosomal protein S4, uL30, Ribosomal protein S5, eL8, 40S ribosomal protein S6, uL6, 40S ribosomal protein S7, 60S ribosomal protein L10, 40S ribosomal protein S8, Ribosomal protein L11, Ribosomal protein S9 (Predicted), S10_plectin domain-ontaining protein, eL13, Ribosomal protein S11, Ribosomal protein L14, 40S ribosomal protein S12, Ribosomal protein L15, Ribosomal_S13_N domain-containing protein, uL13, uS11, uL22, uS19, eL18, Ribosomal protein S16, eL19, eS17, eL20, eS13, eL21, eS19, eL22, Ribosomal_S10 domain-containing protein, Ribosomal protein L23, eS21, TRASH domain-containing protein, Ribosomal protein S15a, Ribosomal_L23eN domain-containing protein, poly-lysine nascent chain, uS12, Ribosomal protein L26, eS24, 60S ribosomal protein L27, eS25, Ribosomal_L18e/L15P domain-containing protein, eS26, eL29, 40S ribosomal protein S27, Ribosomal_L7Ae domain-containing protein, Ribosomal protein S28, eL31, uS14, eL32, 40S ribosomal protein S30, eL33, Ribosomal protein S27a, eL34, WD_REPEATS_REGION domain-containing protein, uL29, 60S ribosomal protein L36, Ribosomal protein L37, eL38, eL39, eL40, 60s ribosomal protein l41, eL42, eL43, Ribosomal_L28e domain-containing protein, uL10, Ribosomal protein L12

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 6SGC contains:
  • 128 hairpin loops from 0 motif groups
  • 280 internal loops from 0 motif groups
  • 73 junction loops from 0 motif groups
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3D Redundancy

6SGC has chains which belong to the following equivalence classes in the current representative set:

Similar structures

8SCB 8VFT 5LZV 5LZZ 5LZT 3JAI 5LZU 5LZY 3JAH 5LZS 5LZW 5LZY 3JAG 5LZX
Structures from NR_all_36843.6
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