7O80 Summary
- Structure title
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Authors
- Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.
- Release date
- 2021-06-02
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
- Chains
- 7 RNA chains from Oryctolagus cuniculus, Severe acute respiratory syndrome coronavirus 2, Bos taurus
- 81 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, mRNA containing SARS-CoV-2 sequence, E-site tRNA, P-site Leu-tRNA(Leu), 28S rRNA, 5S rRNA, 5.8S rRNA
- 40S ribosomal protein S27, Ribosomal protein S28, Ribosomal protein S27a, 40S ribosomal protein S30, Ribosomal protein eS26, RACK1, uS14, 40S ribosomal protein SA, 40S ribosomal protein S3a, Ribosomal protein uS5, 40S ribosomal protein S3, Ribosomal protein eS4, Ribosomal protein S5, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, Ribosomal protein S9 (Predicted), Ribosomal protein eS10, 40S ribosomal protein S11, 40S ribosomal protein S12, uS15, 40S ribosomal protein uS11, 40S ribosomal protein uS19, Ribosomal protein S16, 40S ribosomal protein eS17, 40S ribosomal protein S18, Ribosomal protein eS19, 40S ribosomal protein uS10, Ribosomal protein eS21, Ribosomal protein S15a, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, 60s ribosomal protein l41, Ribosomal protein uL2, Ribosomal protein L3, 60S ribosomal protein L4, Ribosomal_L18_c domain-containing protein, 60S ribosomal protein L6, Ribosomal Protein uL30, Ribosomal protein eL8, 60S ribosomal protein L9, 60S ribosomal protein L10, Ribosomal protein L11, Replicase polyprotein 1ab, Ribosomal protein eL13, Ribosomal protein L14, Ribosomal protein L15, Ribosomal protein L13a, uL22, Ribosomal protein L18, 60S ribosomal protein L19, Ribosomal protein L18a, eL21, Ribosomal protein eL22, Ribosomal protein L23, eL24, uL23, Ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, 60S ribosomal protein L29, eL30, eL31, eL32, eL33, 60S ribosomal protein L34, uL29, 60S ribosomal protein L36, Ribosomal protein L37, eL38, eL39, 60S ribosomal protein L40, eL42, eL43, Ribosomal protein eL28, 60S acidic ribosomal protein P0, Ribosomal protein L12, Ribosomal protein, Eukaryotic peptide chain release factor subunit 1, ATP binding cassette subfamily E member 1
Pairwise Interactions
Interactions annotated by FR3D:- 2,256 base-pairs
- 6,132 base-stacking
- 98 base-phosphate
- 124 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 7O80 contains:- 129 hairpin loops from 0 motif groups
- 362 internal loops from 0 motif groups
- 79 junction loops from 0 motif groups
3D Redundancy
7O80 has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.43 (1)
- NR_all_10255.43 (1)
- NR_all_21280.41 (1)
- NR_all_32613.3 (1)
- NR_all_79803.1 (1) rep
- NR_4.0_06650.43 (1)
- NR_4.0_10255.43 (1)
- NR_4.0_21280.41 (1)
- NR_4.0_32613.3 (1)
- NR_4.0_79803.1 (1) rep
- NR_3.5_06650.43 (1)
- NR_3.5_10255.43 (1)
- NR_3.5_21280.41 (1)
- NR_3.5_32613.3 (1)
- NR_3.5_79803.1 (1) rep
- NR_3.0_06650.43 (1)
- NR_3.0_10255.43 (1)
- NR_3.0_21280.41 (1)
- NR_3.0_32613.3 (1)
- NR_3.0_79803.1 (1) rep
- NR_20.0_06650.43 (1)
- NR_20.0_10255.43 (1)
- NR_20.0_21280.41 (1)
- NR_20.0_32613.3 (1)
- NR_20.0_79803.1 (1) rep
Similar structures
7O7Z 8SCB 7JQB 7UCK 8VVQ 9QQA 9BDL 8P03 7NWI 8P2K 8VVP 6W2T 9BDN 9F1B 6P4H 7ZJX 6P4G 8P09 7TOR 7O81 7SYS 6W2S 6MTC 6MTD 7UCJ 9MR4 6P5I 9F1D 6P5N 7SYW 5LZV 6MTE 9QQB 7JQC 8BHF 6YAL 6MTB 6P5K 7SYQ 5LZZ 6D90 5LZS 6YAN 6ZVK 8VVR 7NWG 6HCF 7SYR 9F1C 8VVS 7SYX 5LZW 5LZT 7SYN 6R5Q 7MDZ 7SYV 6D9J 9BDP 3JAH 8VVT 6R6P 8VFT 6GZ5 6GZ4 7SYK 5LZU 7SYP 3JAG 6P5J 7SYU 7SYG 6GZ3 5LZY 7TOQ 6YAM 3JAI 7SYL 9C8K 8VVV 7SYT 6R6G 7SYM 7SYJ 7SYI 7NWH 7SYO 7A01 5FLX 6HCJ 6R7Q 7SYH 5K0Y 5LZX 8VVU 6HCQ 9CPA 6HCM 4KZY 4KZZ 4KZX 4UJE 4D5L 4D61 4UJC 3JAJ 4UJD 3JAN 7O7Y 7ZJW 6SGC 8BTK 7OYDStructures from NR_all_21280.41