7OYD Summary
- Structure title
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Authors
- Leesch, F., Lorenzo-Orts, L., Grishkovskaya, I., Kandolf, S., Belacic, K., Meinhart, A., Haselbach, D., Pauli, A.
- Release date
- 2022-07-20
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
- Chains
- 4 RNA chains from Oryctolagus cuniculus
- 79 other chains
- Nucleic acid compounds
- Other compounds
- 28S rRNA, 5.8S rRNA, 18S rRNA, 5S rRNA
- Ribosomal protein L8, 40S ribosomal protein SA, RPS26, uL3, 40S ribosomal protein S3a, 40S ribosomal protein S27, 60S ribosomal protein L4, RPS2, Ribosomal protein S28, 60S ribosomal protein L5, Ribosomal protein S3, uS14, 60S ribosomal protein L6, 40S ribosomal protein S4, 40S ribosomal protein S30, uL30, Ribosomal protein S5, RPL7A, 40S ribosomal protein S6, RACK1, 60S ribosomal protein L9, 40S ribosomal protein S7, 60S ribosomal protein L10, 40S ribosomal protein S8, Ribosomal protein L11, Ribosomal protein S9 (Predicted), eS10, L13, 40S ribosomal protein S11, 60S ribosomal protein L14, Ribosomal protein L15, uS15, RPL13A, RPS14, 60S ribosomal protein L17, 40S ribosomal protein uS19, RPL18, Ribosomal protein S16, 60S ribosomal protein L19, 40S ribosomal protein eS17, RPL18A, 40S ribosomal protein uS13, eL21, RPS19, RPL22, 40S ribosomal protein uS10, Ribosomal protein L23, 40S ribosomal protein S21, eL24, Ribosomal protein S15a, RPL23A, RPS23, Ribosomal protein L26, 40S ribosomal protein S24, 60S ribosomal protein L27, 40S ribosomal protein S25, uL15, 60S ribosomal protein L29, eL30, eL31, eL32, eL33, 60S ribosomal protein L34, uL29, 60S ribosomal protein L36, Ribosomal protein L37, eL38, eL39, RPL40, 60s ribosomal protein l41, RPL36A, eL43, eL28, RPLP0, Dap1b, Eukaryotic translation initiation factor 5A-1, EEF2, SERPINE1 mRNA binding protein 1, Ribosomal protein uL1
Pairwise Interactions
Interactions annotated by FR3D:- 1,963 base-pairs
- 5,446 base-stacking
- 89 base-phosphate
- 125 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 7OYD contains:- 116 hairpin loops from 0 motif groups
- 295 internal loops from 0 motif groups
- 72 junction loops from 0 motif groups
3D Redundancy
7OYD has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.41 (1)
- NR_all_10255.41 (1)
- NR_all_21280.39 (1)
- NR_4.0_06650.41 (1)
- NR_4.0_10255.41 (1)
- NR_4.0_21280.39 (1)
- NR_3.5_06650.41 (1)
- NR_3.5_10255.41 (1)
- NR_3.5_21280.39 (1)
- NR_3.0_06650.41 (1)
- NR_3.0_10255.41 (1)
- NR_3.0_21280.39 (1)
- NR_20.0_06650.41 (1)
- NR_20.0_10255.41 (1)
- NR_20.0_21280.39 (1)
- NR_2.5_06650.41 (1)
- NR_2.5_10255.41 (1)
- NR_2.5_21280.39 (1)
Similar structures
7O7Y 7O7Z 8SCB 7ZJW 7O80 8P2K 8RJB 9QQA 8B6C 8VVQ 8RJD 8B5L 9BDL 7UCK 8BPO 6SGC 7OBR 9F1B 7QWQ 7O81 7TOR 8RJC 7ZJX 7QWR 8VVP 7TOQ 7NWI 8BHF 8VVT 6R6P 6R5Q 9BDN 6P5I 6P5J 9F1D 6P5K 6ZVK 7UCJ 8VVR 8VVS 6P5N 7MDZ 6D9J 7NFX 7TM3 8BTK 9QQB 6T59 8VFT 8VVV 7A01 6MTD 5LZS 5LZV 7QWS 6MTE 6MTC 6D90 6GZ5 5LZZ 9F1C 6GZ3 5LZW 6MTB 6GZ4 9BDP 5LZT 7NWG 5LZX 6HCJ 6R6G 5LZU 7TUT 6FRK 8VVU 6HCF 3JAH 6R7Q 6FTI 7NWH 3JAG 5LZY 3JAI 3J92 6FTJ 6HCQ 6HCM 4UJE 6FTG 3JAN 3JAJ 4UJD 4D67 4D5Y 4UJCStructures from NR_all_06650.41