7OYD Summary
- Structure title
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Authors
- Leesch, F., Lorenzo-Orts, L., Grishkovskaya, I., Kandolf, S., Belacic, K., Meinhart, A., Haselbach, D., Pauli, A.
- Release date
- 2022-07-20
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
- Chains
- 4 RNA chains from Oryctolagus cuniculus
- 79 other chains
- Nucleic acid compounds
- Other compounds
- 28S rRNA, 5.8S rRNA, 18S rRNA, 5S rRNA
- Ribosomal protein L8, 40S ribosomal protein SA, RPS26, uL3, 40S ribosomal protein S3a, 40S ribosomal protein S27, 60S ribosomal protein L4, RPS2, Ribosomal protein S28, 60S ribosomal protein L5, Ribosomal protein S3, uS14, 60S ribosomal protein L6, 40S ribosomal protein S4, 40S ribosomal protein S30, uL30, Ribosomal protein S5, RPL7A, 40S ribosomal protein S6, RACK1, 60S ribosomal protein L9, 40S ribosomal protein S7, 60S ribosomal protein L10, 40S ribosomal protein S8, Ribosomal protein L11, Ribosomal protein S9 (Predicted), eS10, L13, 40S ribosomal protein S11, 60S ribosomal protein L14, Ribosomal protein L15, uS15, RPL13A, RPS14, 60S ribosomal protein L17, 40S ribosomal protein uS19, RPL18, Ribosomal protein S16, 60S ribosomal protein L19, 40S ribosomal protein eS17, RPL18A, 40S ribosomal protein uS13, eL21, RPS19, RPL22, 40S ribosomal protein uS10, Ribosomal protein L23, 40S ribosomal protein S21, eL24, Ribosomal protein S15a, RPL23A, RPS23, Ribosomal protein L26, 40S ribosomal protein S24, 60S ribosomal protein L27, 40S ribosomal protein S25, uL15, 60S ribosomal protein L29, eL30, eL31, eL32, eL33, 60S ribosomal protein L34, uL29, 60S ribosomal protein L36, Ribosomal protein L37, eL38, eL39, RPL40, 60s ribosomal protein l41, RPL36A, eL43, eL28, RPLP0, Dap1b, Eukaryotic translation initiation factor 5A-1, EEF2, SERPINE1 mRNA binding protein 1, Ribosomal protein uL1
Pairwise Interactions
Interactions annotated by FR3D:- 1,963 base-pairs
- 5,446 base-stacking
- 89 base-phosphate
- 125 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 7OYD contains:- 116 hairpin loops from 0 motif groups
- 295 internal loops from 0 motif groups
- 72 junction loops from 0 motif groups
3D Redundancy
7OYD has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.43 (1)
- NR_all_10255.43 (1)
- NR_all_21280.41 (1)
- NR_4.0_06650.43 (1)
- NR_4.0_10255.43 (1)
- NR_4.0_21280.41 (1)
- NR_3.5_06650.43 (1)
- NR_3.5_10255.43 (1)
- NR_3.5_21280.41 (1)
- NR_3.0_06650.43 (1)
- NR_3.0_10255.43 (1)
- NR_3.0_21280.41 (1)
- NR_20.0_06650.43 (1)
- NR_20.0_10255.43 (1)
- NR_20.0_21280.41 (1)
- NR_2.5_06650.43 (1)
- NR_2.5_10255.43 (1)
- NR_2.5_21280.41 (1)
Similar structures
8SCB 7O7Z 8RJB 8RJD 8RJC 8B6C 8B5L 8VVQ 9BDL 8BPO 9QQA 8P2K 7UCK 7NWI 7TOR 8VVP 9BDN 7ZJX 9F1B 9MR4 7TM3 6P5I 8BHF 7OBR 7O81 6P5K 7UCJ 6MTD 7TOQ 6MTE 6P5N 6MTC 6R5Q 9F1D 7MDZ 8VVT 5LZV 5LZS 6MTB 9QQB 5LZZ 6P5J 7A01 6R6P 8VVR 8VVS 7NWG 7QWQ 8VFT 6ZVK 6D90 7NFX 7QWR 5LZW 7TUT 5LZT 6HCF 9F1C 7NWH 9BDP 8VVV 6D9J 6GZ5 6GZ4 5LZU 6GZ3 6FRK 3JAH 6R6G 5LZY 3JAG 6HCJ 6R7Q 3JAI 8VVU 5LZX 3J92 6FTI 6FTJ 6HCQ 6HCM 7QWS 6T59 4UJE 6FTG 4D67 4D5Y 4UJC 4UJD 3JAJ 3JAN 7O7Y 7ZJW 7O80 6SGC 8BTKStructures from NR_all_06650.43