8CVO Summary
- Structure title
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Authors
- Lomakin, I.B., Devarkar, S.C., Bunick, C.G.
- Release date
- 2023-03-15
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.0 Å
- Chains
- 1 RNA chain from Cutibacterium acnes
- 8 other chains
- Nucleic acid compounds
- Other compounds
- 16S ribosomal RNA
- 30S ribosomal protein S5, 30S ribosomal protein S3, 30S ribosomal protein S7, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S19
Pairwise Interactions
Interactions annotated by FR3D:- 186 base-pairs
- 493 base-stacking
- 47 base-phosphate
- 55 base-ribose
- 19 oxygen stacking
- 26 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8CVO contains:- 9 hairpin loops from 0 motif groups
- 20 internal loops from 0 motif groups
- 11 junction loops from 0 motif groups
3D Redundancy
8CVO has chains which belong to the following equivalence classes in the current representative set:- NR_all_86966.1 (1)
- NR_4.0_86966.1 (1)
- NR_3.5_86966.1 (1)
- NR_3.0_86966.1 (1)
- NR_20.0_86966.1 (1)