8CWO Summary
- Structure title
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map
- Authors
- Lomakin, I.B., Devarkar, S.C., Bunick, C.G.
- Release date
- 2023-03-15
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
- Chains
- 2 RNA chains from Cutibacterium acnes, Escherichia coli
- 13 other chains
- Nucleic acid compounds
- Other compounds
- 16S ribosomal RNA, mRNA
- 30S ribosomal protein S2, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S8, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S20, 30S ribosomal protein bS22
Pairwise Interactions
Interactions annotated by FR3D:- 436 base-pairs
- 1,122 base-stacking
- 120 base-phosphate
- 112 base-ribose
- 44 oxygen stacking
- 47 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8CWO contains:- 24 hairpin loops from 0 motif groups
- 51 internal loops from 0 motif groups
- 12 junction loops from 0 motif groups
3D Redundancy
8CWO has chains which belong to the following equivalence classes in the current representative set:- NR_all_86966.1 (1)
- NR_all_85270.1 (1) rep
- NR_4.0_86966.1 (1)
- NR_4.0_85270.1 (1) rep
- NR_3.5_86966.1 (1)
- NR_3.5_85270.1 (1) rep
- NR_3.0_86966.1 (1)
- NR_3.0_85270.1 (1) rep
- NR_20.0_86966.1 (1)
- NR_20.0_85270.1 (1) rep