8G9Z Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8G9Z_001 | 1/E/15:20A | No text annotation HL_75660.5 | ||
| HL_8G9Z_003 | 1/E/47C:47H | GNRA related HL_04783.2 | ||
| HL_8G9Z_004 | 1/E/53:61 | T-loop with 2 stacked bulged bases HL_28252.7 | ||
| HL_8G9Z_005 | 1/E/15:20A | No text annotation | ||
| HL_8G9Z_007 | 1/E/47C:47H | No text annotation | ||
| HL_8G9Z_008 | 1/E/53:61 | No text annotation | ||
| HL_8G9Z_009 | 1/E/15:20A | No text annotation | ||
| HL_8G9Z_011 | 1/E/47C:47H | No text annotation | ||
| HL_8G9Z_012 | 1/E/53:61 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8G9Z_002 | No text annotation | ||
| HL_8G9Z_006 | No text annotation | ||
| HL_8G9Z_010 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8G9Z_001 | 1/E/5B:7, 1/E/66:67A | Isolated non-canonical cWW pair IL_28037.2 | ||
| IL_8G9Z_002 | 1/E/5B:7, 1/E/66:67A | No text annotation | ||
| IL_8G9Z_003 | 1/E/5B:7, 1/E/66:67A | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_8G9Z_001 | 1/E/7:10, 1/E/25:26, 1/E/44:46, 1/E/47:50, 1/E/64:66 | No text annotation J5_22280.1 | ||
| J5_8G9Z_002 | 1/E/7:10, 1/E/25:26, 1/E/44:46, 1/E/47:50, 1/E/64:66 | No text annotation | ||
| J5_8G9Z_003 | 1/E/7:10, 1/E/25:26, 1/E/44:46, 1/E/47:50, 1/E/64:66 | No text annotation |
Problematic loops
No problematic loops
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