8I0T Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8I0T_001 | 1/B/37:45 | No text annotation | ||
| HL_8I0T_004 | 1/F/64:70 | GNRA | homologous HL_6ASO_001 HL_34789.4 | |
| HL_8I0T_005 | 1/H/52:61 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8I0T_002 | No text annotation | ||
| HL_8I0T_003 | No text annotation | ||
| HL_8I0T_006 | No text annotation | ||
| HL_8I0T_007 | No text annotation | ||
| HL_8I0T_008 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8I0T_002 | 1/B/19:24, 1/B/56:58 | No text annotation | ||
| IL_8I0T_003 | 1/B/24:28, 1/B/54:56 | No text annotation | ||
| IL_8I0T_004 | 1/B/35:37, 1/B/45:47 | No text annotation | ||
| IL_8I0T_018 | 1/F/33:42, 1/G/5:13 | No text annotation | ||
| IL_8I0T_007 | 1/F/38:42, 1/G/5:9 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_8I0T_019 | 1/F/52:53, 1/H/22:25 | Multiple bulged bases | geometric IL_1KXK_003 NA | |
| IL_8I0T_008 | 1/F/58:61, 1/F/75:77 | Isolated non-canonical cWW pair | geometric IL_3TD0_002 NA | |
| IL_8I0T_009 | 1/F/61:62, 1/F/72:75 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_8I0T_021 | 1/F/88:90, 1/H/8:10 | Isolated non-canonical cWW pair | geometric IL_2O3V_001 IL_71625.3 | |
| IL_8I0T_010 | 1/G/85:88, 1/H/41:45 | No text annotation | ||
| IL_8I0T_011 | 1/G/88:91, 1/H/39:41 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8I0T_001 | No text annotation | ||
| IL_8I0T_005 | Single bulged C | ||
| IL_8I0T_006 | No text annotation | ||
| IL_8I0T_020 | No text annotation | ||
| IL_8I0T_022 | Isolated non-canonical cWW pair | ||
| IL_8I0T_012 | No text annotation | ||
| IL_8I0T_013 | No text annotation | ||
| IL_8I0T_023 | No text annotation | ||
| IL_8I0T_014 | No text annotation | ||
| IL_8I0T_015 | No text annotation | ||
| IL_8I0T_016 | No text annotation | ||
| IL_8I0T_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8I0T_001 | 1/F/55:57, 1/F/78:84, 1/H/15:20 | No text annotation |
Problematic loops
No problematic loops
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