8I0U Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8I0U_001 | 1/B/37:45 | No text annotation | ||
| HL_8I0U_004 | 1/F/64:70 | GNRA | homologous HL_6ASO_001 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8I0U_002 | No text annotation | ||
| HL_8I0U_009 | No text annotation | ||
| HL_8I0U_003 | No text annotation | ||
| HL_8I0U_005 | No text annotation | ||
| HL_8I0U_006 | No text annotation | ||
| HL_8I0U_007 | No text annotation | ||
| HL_8I0U_008 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8I0U_002 | 1/B/19:24, 1/B/56:58 | No text annotation | ||
| IL_8I0U_003 | 1/B/24:28, 1/B/54:56 | No text annotation | ||
| IL_8I0U_004 | 1/B/35:37, 1/B/45:47 | No text annotation | ||
| IL_8I0U_019 | 1/F/52:53, 1/H/22:25 | No text annotation | geometric IL_9E6Q_098 IL_44609.1 | |
| IL_8I0U_008 | 1/F/58:61, 1/F/75:77 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 NA | |
| IL_8I0U_009 | 1/F/61:62, 1/F/72:75 | Multiple bulged bases | geometric IL_7RQB_098 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8I0U_001 | No text annotation | ||
| IL_8I0U_005 | Single bulged C | ||
| IL_8I0U_006 | No text annotation | ||
| IL_8I0U_018 | No text annotation | ||
| IL_8I0U_007 | No text annotation | ||
| IL_8I0U_020 | Isolated non-canonical cWW pair | ||
| IL_8I0U_021 | Isolated non-canonical cWW pair | ||
| IL_8I0U_010 | No text annotation | ||
| IL_8I0U_011 | No text annotation | ||
| IL_8I0U_012 | No text annotation | ||
| IL_8I0U_013 | No text annotation | ||
| IL_8I0U_022 | No text annotation | ||
| IL_8I0U_014 | No text annotation | ||
| IL_8I0U_015 | No text annotation | ||
| IL_8I0U_016 | No text annotation | ||
| IL_8I0U_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8I0U_001 | 1/F/55:57, 1/F/78:87, 1/H/11:20 | No text annotation |
Problematic loops
No problematic loops
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