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8R8M Summary

View in PDB or NAKB
Circular interaction diagram PDF
Structure title
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Authors
Koller, T.O., Wilson, D.N.
Release date
2024-07-24
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.4 Å
Chains
6 RNA chains from Escherichia coli BW25113
50 other chains
Nucleic acid compounds
16S ribosomal RNA, mRNA, Isoleucine-tRNA, Leucine-tRNA, 23S ribosomal RNA, 5S ribosomal RNA
Other compounds
Large ribosomal subunit protein bL33, Large ribosomal subunit protein bL34, Large ribosomal subunit protein bL35, Large ribosomal subunit protein bL36A, Large ribosomal subunit protein bL31A, Paenilamicin B2, 30S ribosomal protein S2, Small ribosomal subunit protein uS3, Small ribosomal subunit protein uS4, Small ribosomal subunit protein uS5, 30S ribosomal protein S6, fully modified isoform, 30S ribosomal protein S7, Small ribosomal subunit protein uS8, Small ribosomal subunit protein uS9, Small ribosomal subunit protein uS10, Small ribosomal subunit protein uS11, Small ribosomal subunit protein uS12, Small ribosomal subunit protein uS13, Small ribosomal subunit protein uS14, Small ribosomal subunit protein uS15, 30S ribosomal protein S16, Small ribosomal subunit protein uS17, Small ribosomal subunit protein bS18, Small ribosomal subunit protein uS19, 30S ribosomal protein S20, Small ribosomal subunit protein bS21, Large ribosomal subunit protein uL2, Large ribosomal subunit protein uL3, Large ribosomal subunit protein uL4, Large ribosomal subunit protein uL5, Large ribosomal subunit protein uL6, Large ribosomal subunit protein bL9, Large ribosomal subunit protein uL13, Large ribosomal subunit protein uL14, 50S ribosomal protein L15, Large ribosomal subunit protein uL16, Large ribosomal subunit protein bL17, Large ribosomal subunit protein uL18, Large ribosomal subunit protein bL19, Large ribosomal subunit protein bL20, Large ribosomal subunit protein bL21, Large ribosomal subunit protein uL22, Large ribosomal subunit protein uL23, Large ribosomal subunit protein uL24, 50S ribosomal protein L25, Large ribosomal subunit protein bL27, Large ribosomal subunit protein bL28, Large ribosomal subunit protein uL29, Large ribosomal subunit protein uL30, Large ribosomal subunit protein bL32

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 8R8M contains:
  • 109 hairpin loops from 0 motif groups
  • 185 internal loops from 0 motif groups
  • 64 junction loops from 0 motif groups
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3D Redundancy

8R8M has chains which belong to the following equivalence classes in the current representative set:

Similar structures

8B0X 9Q87 9GHE 8FTO 8BIM 8BIL 8CGU 8BGE 8CEP 9GHD 8CGJ 7K00 9N2B 9GHF 9GHB 8CGR 8BHL 8EIU 8BHP 9N2C 8CAI 7N1P 8BF7 8HSP 9GHA 8EMM 9GUU 7S1I 8HTZ 7N2V 7S1G 9CG5 9CG6 9GUT 9H0L 9FDA 9GUV 9GXX 7S1H 8YUO 7S1K 9AX7 9H8G 8G7P 8IFB 5J7L 8YUQ 5MDV 5H5U 8EKC 8YUP 9AX8 8ZTU 7ST2 8YUS 8ZTV 8FZH 7N31 8CF1 7N2U 9GUP 7UG7 5J8A 9GHC 8G7R 9CG7 4YBB 8CGI 5JC9 5NWY 8SYL 8HU1 7ZTA 8ZEJ 8FZE 7OTC 8PHJ 9FCO 7P3K 8CAZ 8CF8 8FZD 8YUR 5WDT 8G6W 7Y7F 8BGH 9IOT 8G7Q 6SZS 5WFS 9FIB 8CA7 6ORE 7Y7G 5IT8 7NSO 5WE4 8G7S 5J7L 7Y7E 9G06 8BH4 9NL5 8FZJ 5J8A 5MDZ 8FZG 7ST6 4WOI 4WOI 7N2C 9GUQ 6WD0 7D6Z 8FZI 7OIZ 5J91 5JC9 7BOD 9NLH 8IFC 8VWQ 4V9P 7Y7C 6WDE 7NAR 5UYM 8UQL 7NBU 5MGP 4V9O 8BHN 6X7K 4V9P 6LKQ 8URM 7N30 6ENU 9NL6 7Y7H 7Q4K 7SSO 4V9P 7M5D 8W2N 6OM6 7NSQ 9GFT 6H4N 7OJ0 9GUW 7K53 5J88 9GUX 4V9O 4V9P 7BOF 5WE6 7SSN 6WNW 4V52 8BHJ 5U9G 6WDD 7BOH 4YBB 4V57 6XZB 4V9O 8EYT 5U9F 7LV0 4V52 7BOI 5IT8 5LZD 9H9N 5WF0 7ST7 4V57 4V6C 9NLE 7Y7D 5WFK 7JT1 8FZF 9GFT 4V54 7K50 9NLF 6I7V 9GGR 9NL7 9H9J 6X7F 9GUS 7AF8 4WWW 7OE0 6Q9A 4V53 8ZFI 9H9L 4U1U 6Y69 9NLQ 4V64 4V7T 8UTJ 8URY 9DUL 7AF3 4V54 6BU8 5LZE 5UYL 7CPJ 9MKK 9GGR 6WDM 5IQR 8UX8 7AF5 6XZA 5J88 4V56 5J91 8GHU 7K55 9NLB 4WF1 7BOE 4V64 8UXB 7JT2 4V53 9MQ4 8EYQ 6WD2 7B5K 4V50 8K4E 4U27 6WD5 6WD3 9H9H 4V7S 4V55 4V56 6OG7 8T5D 4V7V 7NAX 7SSD 6WD4 7K54 9NJF 6WDK 7OI0 6ENF 5KPW 9NLS 4V9O 6I7V 5NP6 8Q4F 4U26 6OFX 4V50 4U1U 6WDF 4V4Q 6WDG 6OSK 6WNV 5KPS 5O2R 9NLJ 7AFA 4V55 4U24 6WDJ 6WDL 6WD6 6ORL 5KPX 4U27 6WD9 6BY1 9NJV 4U25 6BY1 5UYK 7JSZ 5UYQ 4V4Q 6WD8 6OT3 8UZG 8FIZ 7JSW 4V6C 4V85 9NKL 6WDA 9MOR 4WWW 8VSA 5UYP 6OSQ 4V9D 6VWL 5KCR 5KPV 6O7K 9DUK 7K51 9H9M 6WD1 6WD7 7SSW 8VKV 6OGF 6OGI 8UQP 4U25 8UZ3 4WF1 8G38 7D80 4V89 4V9D 7K52 6XDQ 4U20 7NAS 4V7U 9H9I 7QGN 4U26 4V7T 7NSP 8K3O 5UYN 7O5H 6OUO 4V5Y 7NAT 6VYS 8VOR 8V03 4U1V 7OE1 4U24 7JSS 6GWT 8VV4 8VS9 7SSL 4U1V 8Y5L 3JCJ 6OST 6GXM 6VWM 4V6D 4V5Y 7AFO 4V7S 4U20 6W77 8JSG 8T5H 6WDC 6GXO 4V6D 6DNC 6W7N 6WDI 3JBV 8VUP 6O9J 6VWN 6WDB 6GXN 8Y5Q 4V6E 4V7V 7JT3 7NAU 6WDH 8VOS 8Y5T 8Y5O 3J9Z 5LZF 6ENJ 8Y5R 7AFI 6NQB 8Y5S 7QG8 6C4I 6W7W 8JSH 8Y5M 5JU8 7SS9 8Y5N 5LZC 3J9Y 4V7U 6W6K 7AFD 4V6E 7QGH 6OGG 4V9C 8VOO 5NO2 6XGF 6X9Q 5NO3 6O9K 8UQM 8URI 3JBU 5KCS 3JA1 5NO4 4V9C 8G2U 5LZB 6W7M 7AFH 8URH 5U4J 3JCN 8VL1 8G34 5U4I 6XDR 8UR0 8VOP 5JTE 8G31 6X6T 7AFN 7QGR 7AFL 8URX 7NAV 9H9K 3JCD 8Y5P 6XE0 8Y5K 4V5H 4V6M 6GXP 4V69 4V5B 5L3P 4V5B 4V7C 4V7D 3JCE 6AWB 7AFK 5MY1 4V6K 6XII 6H58 6H58 4V7B 6AWD 6AWC 4V6V 8VOQ 6VZ2 6VZ5 6VYZ 4V6T 4V6Q 4V6R 4V7I 4V6N 4V7A 3DG2 3DG0 4V75 4V6L 4V6S 4V65 4V66 4V6P 4V72 3J28 5ME0 3J2A 4V6Z 4V6Y 4V6O 3J2B 4ADV 3J2C 3DG4 3J29 4V73 5J5B 4V79 3J2E 4V4H 4V4H 5J5B 4V70 3DG5 4A2I 3J2G 4V77 4V74 1ML5 4V76 4V4V 3J2F 4V4W 3J2H 3J2D 4V78 5UZ4 4V71 2YKR 4V49 4V4A 5MDY 7TOS 6Q98 6Q97 5ME1 4V4G 4V4G 4V4G 4V4G 4V4G 8AYE 8QOA 8QBT 8R6C 8AKN 9FBV 7S1J 7O1A 7SA4 6YSS 7NWT 6TC3 6TBV 8QK7 8P16 8P18 8P17 8AM9 5AFI 7OT5 7O1C 7OIF 7OII 8B7Y 7NWW 7O19 7AC7 8PKL 7PJV 7PJY 6YSR 6ZTO 6ZTP 6ZU1 6YST 7ABZ 7OIG 7ACJ 9GR1 8R3V 8R3V 8PEG 5MDW 8A3L 7ACR 8RCL 8RCL 8RCM 8RCM 5LZA 6ZTM 6ZTJ 6YSU 7BOG 7PJW 7PJS 6ZTL 6ZTN 8RCS 8RCS 8PVA 8RCT 8RCT 7PJZ 7PJT 7PJX 7PJU 4V48 4V47
Structures from NR_all_56726.147
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