8RJC Summary
- Structure title
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Authors
- Lewis, A.J.O., Hegde, R.S.
- Release date
- 2024-01-24
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
- Chains
- 4 RNA chains from Oryctolagus cuniculus, Sus scrofa
- 52 other chains
- Nucleic acid compounds
- Other compounds
- 28S rRNA, P-site tRNA, 5S rRNA, 5.8S rRNA
- Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, Protein transport protein Sec61 subunit gamma, Stress-associated endoplasmic reticulum protein, Translocon-associated protein subunit alpha, Translocon-associated protein subunit beta, Translocon-associated protein subunit gamma, Translocon-associated protein subunit delta, Calnexin, Ribosomal protein L8, Nascent chain, Large ribosomal subunit protein uL4, Ribosomal_L18_c domain-containing protein, 60S ribosomal protein L6, Ribosomal Protein uL30, 60S ribosomal protein L7a, 60S ribosomal protein L9, 60S ribosomal protein L10, 60S ribosomal protein L11, 60S ribosomal protein L13, 60S ribosomal protein L14, Ribosomal protein L15, 60S ribosomal protein L13, uL22, Ribosomal protein L18, Ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, Ribosomal protein L22, Ribosomal protein L23, Ribosomal protein L24, Ribosomal_L23eN domain-containing protein, Ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31, Ribosomal protein L32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, Ribosomal protein L37, 60S ribosomal protein L38, 60S ribosomal protein L39-like, eL40, 60S ribosomal protein L41, 60S ribosomal protein L36a-like, 60S ribosomal protein L37a, 60S ribosomal protein L28, Ribosomal protein L3
Pairwise Interactions
Interactions annotated by FR3D:- 1,524 base-pairs
- 3,995 base-stacking
- 70 base-phosphate
- 96 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8RJC contains:- 85 hairpin loops from 0 motif groups
- 182 internal loops from 0 motif groups
- 48 junction loops from 0 motif groups
3D Redundancy
8RJC has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.40 (1)
- NR_all_10255.40 (1)
- NR_all_86318.2 (1)
- NR_4.0_06650.40 (1)
- NR_4.0_10255.40 (1)
- NR_4.0_86318.2 (1)
- NR_3.5_06650.40 (1)
- NR_3.5_10255.40 (1)
- NR_3.5_86318.2 (1)
- NR_3.0_06650.40 (1)
- NR_3.0_10255.40 (1)
- NR_3.0_86318.2 (1)
- NR_20.0_06650.40 (1)
- NR_20.0_10255.40 (1)
- NR_20.0_86318.2 (1)
Similar structures
7O7Y 7O7Z 7OYD 8SCB 7ZJW 7O80 8P2K 8RJB 9QQA 8B6C 8RJD 8B5L 9BDL 7UCK 8BPO 6SGC 7OBR 9F1B 7QWQ 7O81 7TOR 7ZJX 7QWR 7TOQ 7NWI 8BHF 6R6P 6R5Q 9BDN 6P5I 6P5J 9F1D 6P5K 6ZVK 7UCJ 6P5N 7MDZ 6D9J 7NFX 7TM3 8BTK 9QQB 6T59 8VFT 7A01 6MTD 5LZS 5LZV 7QWS 6MTE 6MTC 6D90 6GZ5 5LZZ 9F1C 6GZ3 5LZW 6MTB 6GZ4 9BDP 5LZT 7NWG 5LZX 6HCJ 6R6G 5LZU 7TUT 6FRK 6HCF 3JAH 6R7Q 6FTI 7NWH 3JAG 5LZY 3JAI 3J92 6FTJ 6HCQ 6HCM 4UJE 6FTG 3JAN 3JAJ 4UJD 4D5Y 4D67 4UJCStructures from NR_all_06650.40