8Y37 Summary
- Structure title
- Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.
- Authors
- Li, Y., Lu, G., Li, J., Pei, X., Lin, J.
- Release date
- 2024-07-24
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
- Chains
- 2 RNA chains from Staphylococcus aureus
- 28 other chains
- Nucleic acid compounds
- Other compounds
- 23S ribosomal RNA, 5S ribosomal RNA
- Large ribosomal subunit protein bL33B, Large ribosomal subunit protein bL34, Large ribosomal subunit protein bL35, Large ribosomal subunit protein bL36, Large ribosomal subunit protein uL2, Large ribosomal subunit protein uL3, Large ribosomal subunit protein uL4, Large ribosomal subunit protein uL5, Large ribosomal subunit protein uL6, Large ribosomal subunit protein uL13, Large ribosomal subunit protein uL14, Large ribosomal subunit protein uL15, Large ribosomal subunit protein uL16, Large ribosomal subunit protein bL17, Large ribosomal subunit protein uL18, Large ribosomal subunit protein bL19, Large ribosomal subunit protein bL20, Large ribosomal subunit protein bL21, Large ribosomal subunit protein uL22, Large ribosomal subunit protein uL23, Large ribosomal subunit protein uL24, Large ribosomal subunit protein bL25, Large ribosomal subunit protein bL27, Large ribosomal subunit protein bL28, Large ribosomal subunit protein uL29, Large ribosomal subunit protein uL30, Large ribosomal subunit protein bL31B, Large ribosomal subunit protein bL32
Pairwise Interactions
Interactions annotated by FR3D:- 1,061 base-pairs
- 2,938 base-stacking
- 340 base-phosphate
- 397 base-ribose
- 154 oxygen stacking
- 140 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8Y37 contains:- 75 hairpin loops from 0 motif groups
- 132 internal loops from 0 motif groups
- 37 junction loops from 0 motif groups
3D Redundancy
8Y37 has chains which belong to the following equivalence classes in the current representative set:- NR_all_90633.29 (1)
- NR_all_83891.28 (1)
- NR_4.0_90633.29 (1)
- NR_4.0_83891.28 (1)
- NR_3.5_90633.29 (1)
- NR_3.5_83891.28 (1)
- NR_3.0_90633.29 (1)
- NR_3.0_83891.28 (1)
- NR_20.0_90633.29 (1)
- NR_20.0_83891.28 (1)
Similar structures
9QEH 9QEG 9GHG 9T4R 7ASM 9GHH 6WQN 7TTW 6WRU 6S0Z 6WQQ 9I88 9I89 7ASP 6WRS 6DDG 7NHM 4WF9 5NGM 5HL7 6DDD 7NHL 7ASO 4WFA 5T7V 4WFB 5HKV 4WCE 7TTU 6S0X 5NRG 6SJ6 5ND8 5TCU 5ND9 6S12 7ASN 5LI0 6FXC 6FXC 7P48 6S13 8P2G 8P2F 8P2H 8Y38 6HMA 8Y36 6YEF 8Y39Structures from NR_all_90633.29