9BDN Summary
- Structure title
- 80S ribosome with angiogenin and tRNAAla
- Authors
- Loveland, A.B., Korostelev, A.A.
- Release date
- 2024-07-24
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
- Chains
- 8 RNA chains from Oryctolagus cuniculus, Escherichia coli, Homo sapiens, Saccharomyces cerevisiae
- 77 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, 28S rRNA, 5.8S rRNA, 5S rRNA, tRNAfMet, mRNA, tRNAfMet, tRNAAla
- 60S ribosomal protein L8, 60S ribosomal protein L3, 60S ribosomal protein L4, 60S ribosomal protein L5, 60S ribosomal protein L6, 60S ribosomal protein L7, Large ribosomal subunit protein eL8, 60S ribosomal protein L9, Ribosomal protein L10, 60S ribosomal protein L11, uL11, Large ribosomal subunit protein eL13, 60S ribosomal protein L14, 60S ribosomal protein L15, Large ribosomal subunit protein uL13, 60S ribosomal protein L17, Large ribosomal subunit protein eL18, 60S ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, Large ribosomal subunit protein eL22, 60S ribosomal protein L23, Ribosomal protein L24, Large ribosomal subunit protein uL23, 60S ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, Large ribosomal subunit protein eL29, 60S ribosomal protein L30, 60S ribosomal protein L31, Large ribosomal subunit protein eL32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, 60S ribosomal protein L37, Large ribosomal subunit protein eL38, 60S ribosomal protein L39, Large ribosomal subunit protein eL40, eL41, eL42, 60S ribosomal protein L37a, 60S ribosomal protein L28, 60S acidic ribosomal protein P0, Angiogenin, Receptor of activated protein C kinase 1, 40S_SA_C domain-containing protein, 40S ribosomal protein S3a, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S4, Ribosomal protein S5, 40S ribosomal protein S6, Small ribosomal subunit protein eS7, 40S ribosomal protein S8, 40S ribosomal protein S9, 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, 40S ribosomal protein S13, Small ribosomal subunit protein uS11, 40S ribosomal protein S15, Small ribosomal subunit protein uS9, 40S ribosomal protein S17, 40S ribosomal protein S18, Small ribosomal subunit protein eS19, 40S ribosomal protein S20, eS21, 40S ribosomal protein S15a, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, eS26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S29, 40S ribosomal protein S30
Pairwise Interactions
Interactions annotated by FR3D:- 2,005 base-pairs
- 5,772 base-stacking
- 100 base-phosphate
- 126 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9BDN contains:- 134 hairpin loops from 0 motif groups
- 310 internal loops from 0 motif groups
- 68 junction loops from 0 motif groups
3D Redundancy
9BDN has chains which belong to the following equivalence classes in the current representative set:- NR_all_35542.154 (2)
- NR_all_06650.42 (1)
- NR_all_10255.42 (1)
- NR_all_21280.40 (1)
- NR_all_53745.5 (1)
- NR_4.0_35542.154 (2)
- NR_4.0_06650.42 (1)
- NR_4.0_10255.42 (1)
- NR_4.0_21280.40 (1)
- NR_4.0_53745.5 (1)
- NR_3.5_35542.154 (2)
- NR_3.5_06650.42 (1)
- NR_3.5_10255.42 (1)
- NR_3.5_21280.40 (1)
- NR_3.5_53745.5 (1)
- NR_20.0_35542.154 (2)
- NR_20.0_06650.42 (1)
- NR_20.0_10255.42 (1)
- NR_20.0_21280.40 (1)
- NR_20.0_53745.5 (1)
Similar structures
7O7Z 8SCB 7JQB 7UCK 8VVQ 9QQA 9BDL 8P03 7NWI 8P2K 8VVP 6W2T 9F1B 6P4H 7ZJX 6P4G 8P09 7TOR 7O81 7SYS 6W2S 6MTC 6MTD 7UCJ 6P5I 9F1D 6P5N 7SYW 5LZV 6MTE 9QQB 7JQC 8BHF 6YAL 6MTB 6P5K 7SYQ 5LZZ 6D90 5LZS 6YAN 6ZVK 8VVR 7NWG 6HCF 7SYR 9F1C 8VVS 7SYX 5LZW 5LZT 7SYN 6R5Q 7MDZ 7SYV 6D9J 9BDP 3JAH 8VVT 6R6P 8VFT 6GZ5 6GZ4 7SYK 5LZU 7SYP 3JAG 6P5J 7SYU 7SYG 6GZ3 5LZY 7TOQ 6YAM 3JAI 7SYL 9C8K 8VVV 7SYT 6R6G 7SYM 7SYJ 7SYI 7NWH 7SYO 7A01 5FLX 6HCJ 6R7Q 7SYH 5K0Y 5LZX 8VVU 6HCQ 9CPA 6HCM 4KZY 4KZZ 4KZX 4UJE 4D5L 4D61 4UJC 3JAJ 4UJD 3JAN 7O7Y 7ZJW 7O80 6SGC 8BTK 7OYDStructures from NR_all_21280.40