9BDN Summary
- Structure title
- 80S ribosome with angiogenin and tRNAAla
- Authors
- Loveland, A.B., Korostelev, A.A.
- Release date
- 2024-07-24
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
- Chains
- 8 RNA chains from Oryctolagus cuniculus, Escherichia coli, Homo sapiens, Saccharomyces cerevisiae
- 77 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, 28S rRNA, 5.8S rRNA, 5S rRNA, tRNAfMet, mRNA, tRNAfMet, tRNAAla
- 60S ribosomal protein L8, 60S ribosomal protein L3, 60S ribosomal protein L4, 60S ribosomal protein L5, 60S ribosomal protein L6, 60S ribosomal protein L7, Large ribosomal subunit protein eL8, 60S ribosomal protein L9, Ribosomal protein L10, 60S ribosomal protein L11, uL11, Large ribosomal subunit protein eL13, 60S ribosomal protein L14, 60S ribosomal protein L15, Large ribosomal subunit protein uL13, 60S ribosomal protein L17, Large ribosomal subunit protein eL18, 60S ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, Large ribosomal subunit protein eL22, 60S ribosomal protein L23, Ribosomal protein L24, Large ribosomal subunit protein uL23, 60S ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, Large ribosomal subunit protein eL29, 60S ribosomal protein L30, 60S ribosomal protein L31, Large ribosomal subunit protein eL32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, 60S ribosomal protein L37, Large ribosomal subunit protein eL38, 60S ribosomal protein L39, Large ribosomal subunit protein eL40, eL41, eL42, 60S ribosomal protein L37a, 60S ribosomal protein L28, 60S acidic ribosomal protein P0, Angiogenin, Receptor of activated protein C kinase 1, 40S_SA_C domain-containing protein, 40S ribosomal protein S3a, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S4, Ribosomal protein S5, 40S ribosomal protein S6, Small ribosomal subunit protein eS7, 40S ribosomal protein S8, 40S ribosomal protein S9, 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, 40S ribosomal protein S13, Small ribosomal subunit protein uS11, 40S ribosomal protein S15, Small ribosomal subunit protein uS9, 40S ribosomal protein S17, 40S ribosomal protein S18, Small ribosomal subunit protein eS19, 40S ribosomal protein S20, eS21, 40S ribosomal protein S15a, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, eS26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S29, 40S ribosomal protein S30
Pairwise Interactions
Interactions annotated by FR3D:- 2,005 base-pairs
- 5,772 base-stacking
- 100 base-phosphate
- 126 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9BDN contains:- 134 hairpin loops from 0 motif groups
- 310 internal loops from 0 motif groups
- 68 junction loops from 0 motif groups
3D Redundancy
9BDN has chains which belong to the following equivalence classes in the current representative set:- NR_all_35542.152 (2)
- NR_all_06650.40 (1)
- NR_all_10255.40 (1)
- NR_all_21280.38 (1)
- NR_all_53745.4 (1)
- NR_4.0_35542.152 (2)
- NR_4.0_06650.40 (1)
- NR_4.0_10255.40 (1)
- NR_4.0_21280.38 (1)
- NR_4.0_53745.4 (1)
- NR_3.5_35542.152 (2)
- NR_3.5_06650.40 (1)
- NR_3.5_10255.40 (1)
- NR_3.5_21280.38 (1)
- NR_3.5_53745.4 (1)
- NR_20.0_35542.152 (2)
- NR_20.0_06650.40 (1)
- NR_20.0_10255.40 (1)
- NR_20.0_21280.38 (1)
- NR_20.0_53745.4 (1)
Similar structures
4KZY 4KZZ 4KZX 7O7Y 7O7Z 7OYD 8SCB 7ZJW 9QQA 7O80 8P2K 7JQB 7UCK 9BDL 9F1B 6SGC 7TOR 8P03 7O81 7ZJX 9C8K 7NWI 7UCJ 6YAL 8BHF 9F1D 6R5Q 7TOQ 6ZVK 6P5I 6P5K 6P5J 6P4G 7MDZ 6R6P 6P4H 6P5N 6D9J 8VFT 7JQC 8BTK 9QQB 6W2T 8P09 7A01 5LZS 6MTD 5LZV 6D90 6MTC 6MTE 7SYS 6YAN 6W2S 6GZ5 7SYR 5LZZ 9F1C 5LZW 6GZ3 7SYX 7SYW 6MTB 7NWG 9BDP 6GZ4 5LZT 6YAM 5LZX 6HCJ 7SYQ 6R6G 5LZU 6HCF 7SYV 6R7Q 3JAH 7SYN 7SYP 7NWH 5FLX 5LZY 3JAG 3JAI 7SYG 7SYK 7SYT 7SYI 7SYL 7SYU 7SYH 7SYO 7SYM 7SYJ 5K0Y 6HCQ 9CPA 6HCM 4UJE 3JAN 3JAJ 4UJD 4D61 4D5L 4UJCStructures from NR_all_21280.38