9RHU Summary
- Structure title
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Authors
- Li, X., Zuber, P.K., Loughran, G., Bhatt, P.R., Alquraish, F., Ramakrishnan, V., Firth, A.E., Atkins, J.F.
- Release date
- 2026-01-21
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
- Chains
- 7 RNA chains from Oryctolagus cuniculus, Foot-and-mouth disease virus SAT 2
- 81 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, 28S rRNA, 5S rRNA, 5.8S rRNA, mRNA containing F2A sequence, E-site tRNA-Pro, P-site tRNA-Gly
- 60S ribosomal protein L6, Small ribosomal subunit protein eS27, 60S ribosomal protein L7, Small ribosomal subunit protein eS28, Large ribosomal subunit protein eL8, Ubiquitin-ribosomal protein eS31 fusion protein, 60S ribosomal protein L9, Large ribosomal subunit protein uL2, 40S ribosomal protein eS30, 60S ribosomal protein L10, Ribosomal protein L3, eS26, 60S ribosomal protein L11, Large ribosomal subunit protein uL4, Small ribosomal subunit protein RACK1, Choriogonadotropin subunit beta variant 1,Genome polyprotein,Genome polyprotein, Large ribosomal subunit protein uL18, Small ribosomal subunit protein uS14, Large ribosomal subunit protein eL13, 60S ribosomal protein L14, Ribosomal protein L15, Large ribosomal subunit protein uL13, Small ribosomal subunit protein uS2, Large ribosomal subunit protein uL22, 40S ribosomal protein S3a, eL18, 60S ribosomal protein L34, 40S ribosomal protein S2, Ribosomal protein L19, Small ribosomal subunit protein uS3, Large ribosomal subunit protein eL20, 40S ribosomal protein S4, 60S ribosomal protein L21, Small ribosomal subunit protein uS7, 60S ribosomal protein L22, 40S ribosomal protein S6, Ribosomal protein L23, Small ribosomal subunit protein eS7, Ribosomal protein L24, 40S ribosomal protein S8, Large ribosomal subunit protein uL23, Small ribosomal subunit protein uS4, Ribosomal protein L26, eS10, 60S ribosomal protein L27, Small ribosomal subunit protein uS17, 60S ribosomal protein L27a, Small ribosomal subunit protein eS12, 60S ribosomal protein L29, Small ribosomal subunit protein uS15, 60S ribosomal protein L30, Small ribosomal subunit protein uS11, 60S ribosomal protein L31, Small ribosomal subunit protein uS19, Ribosomal protein L32, Small ribosomal subunit protein uS9, 60S ribosomal protein L35a, Small ribosomal subunit protein eS17, Small ribosomal subunit protein uS13, 60S ribosomal protein L35, 40S ribosomal protein eS19, Large ribosomal subunit protein eL36, Small ribosomal subunit protein uS10, Ribosomal protein L37, Small ribosomal subunit protein eS21, 60S ribosomal protein L38, Small ribosomal subunit protein uS8, 60S ribosomal protein L39-like, 40S ribosomal protein S23, Ubiquitin-ribosomal protein eL40 fusion protein, 40S ribosomal protein S24, Ribosomal protein L36a, Small ribosomal subunit protein eS25, 60S ribosomal protein L37a, Small ribosomal subunit protein eS32, [histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B, Large ribosomal subunit protein uL10, 60S ribosomal protein L12, Ribosomal protein uL1, Eukaryotic peptide chain release factor subunit 1, ATP binding cassette subfamily E member 1
Pairwise Interactions
Interactions annotated by FR3D:- 2,350 base-pairs
- 6,184 base-stacking
- 545 base-phosphate
- 634 base-ribose
- 252 oxygen stacking
- 224 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9RHU contains:- 118 hairpin loops from 0 motif groups
- 286 internal loops from 0 motif groups
- 73 junction loops from 0 motif groups
3D Redundancy
9RHU has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.51 (1)
- NR_all_10255.51 (1)
- NR_all_21280.52 (1)
- NR_all_36843.7 (1)
- NR_all_16481.1 (1) rep
- NR_4.0_06650.51 (1)
- NR_4.0_10255.51 (1)
- NR_4.0_21280.52 (1)
- NR_4.0_36843.7 (1)
- NR_4.0_16481.1 (1) rep
- NR_3.5_06650.51 (1)
- NR_3.5_10255.51 (1)
- NR_3.5_21280.52 (1)
- NR_3.5_36843.7 (1)
- NR_3.5_16481.1 (1) rep
- NR_3.0_06650.51 (1)
- NR_3.0_10255.51 (1)
- NR_3.0_21280.52 (1)
- NR_3.0_36843.7 (1)
- NR_3.0_16481.1 (1) rep
- NR_20.0_06650.51 (1)
- NR_20.0_10255.51 (1)
- NR_20.0_21280.52 (1)
- NR_20.0_36843.7 (1)
- NR_20.0_16481.1 (1) rep
Similar structures
7O7Z 8SCB 9YPZ 9YQ1 9YQ0 7JQB 9YPY 9YPW 7UCK 8VVQ 9QQA 9H6Y 9YPG 9BDL 8P03 9YPO 9YPS 9YPV 7NWI 8P2K 9YPT 9H74 8VVP 11IQ 6W2T 9BDN 9F1B 6P4H 7ZJX 6P4G 8P09 7TOR 7O81 7SYS 6W2S 9NDP 6MTC 6MTD 7UCJ 9MR4 6P5I 9F1D 6P5N 7SYW 5LZV 6MTE 9QQB 7JQC 8BHF 6YAL 6MTB 6P5K 7SYQ 5LZZ 6D90 5LZS 6YAN 6ZVK 8VVR 7NWG 6HCF 7SYR 9F1C 8VVS 7SYX 5LZW 5LZT 7SYN 6R5Q 7MDZ 7SYV 6D9J 9BDP 3JAH 8VVT 6R6P 11HG 8VFT 6GZ5 6GZ4 7SYK 5LZU 7SYP 3JAG 6P5J 7SYU 8SUP 7SYG 6GZ3 5LZY 11JJ 7TOQ 6YAM 3JAI 7SYL 9C8K 8VVV 7SYT 6R6G 9UZK 7SYM 7SYJ 11KH 7SYI 7NWH 9UZM 7SYO 7A01 5FLX 6HCJ 9UZL 6R7Q 7SYH 9OGY 5K0Y 5LZX 8VVU 6HCQ 9CPA 6HCM 4KZY 4KZZ 4KZX 4UJE 4D5L 4D61 4UJC 3JAJ 4UJD 3JAN 7O7Y 7ZJW 7O80 6SGC 8BTK 7OYD 9Q2P 9Q1S 9Q1Q 9Q2T 9Q2OStructures from NR_all_21280.52