Motif IL_45805.1 Version IL_45805.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-14 | 1-16 | 2-6 | 2-15 | 3-6 | 4-5 | 8-12 | 8-14 | 9-11 | 9-13 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J9W | 0.2238 | 2 | BA | LSU rRNA | G | 528 | C | 529 | A | 530 | C | 531 | * | G | 542 | A | 543 | G | 544 | U | 545 | G | 546 | A | 547 | A | 548 | A | 549 | A | 551 | G | 552 | A | 553 | C | 555 | cWW | cSW | tHS | cWW | tWH | tSH | |||||
| 2 | ➜ | 4IOA | 0.1132 | 2 | X | LSU rRNA | G | 492 | A | 493 | A | 494 | C | 495 | * | G | 506 | A | 507 | G | 508 | U | 509 | G | 510 | A | 511 | A | 512 | A | 513 | A | 515 | G | 516 | A | 517 | C | 519 | tSS | cWW | cSW | tHH | tHS | cWW | tWH | tSH | |||
| 3 | ➜ | 5J7L | 0.0000 | 2 | DA | LSU rRNA | G | 481 | A | 482 | A | 483 | C | 484 | * | G | 496 | A | 497 | G | 498 | U | 499 | G | 500 | A | 501 | A | 502 | A | 503 | A | 505 | G | 506 | A | 507 | C | 509 | tSS | cWW | cSW | tHH | tHS | cWW | tWH | tSH | |||
| 4 | ➜ | 5FDU | 0.1205 | 2 | 1A | LSU rRNA | G | 507 | A | 508 | A | 509 | C | 510 | * | G | 521 | A | 522 | G | 523 | U | 524 | G | 525 | A | 526 | A | 527 | A | 528 | A | 530 | G | 531 | A | 532 | C | 534 | tSS | cWW | cSW | tHH | tHS | cWW | tWH | ncWW | tSH | ||
| 5 | ➜ | 4V91 | 0.2081 | 2 | 1 | LSU rRNA | G | 376 | A | 377 | A | 378 | C | 379 | * | G | 390 | A | 391 | G | 392 | U | 393 | G | 394 | A | 395 | A | 396 | A | 397 | A | 399 | G | 400 | U | 401 | C | 403 | tSS | cWW | cSW | tHS | cWW | tWH | tSH | ||||
| 6 | ➜ | 4V88 | 0.2890 | 2 | A5 | LSU rRNA | G | 376 | A | 377 | A | 378 | C | 379 | * | G | 390 | A | 391 | G | 392 | U | 393 | G | 394 | A | 395 | A | 396 | A | 397 | A | 399 | G | 400 | U | 401 | C | 403 | tSS | cWW | cSW | tHS | cWW | tWH | tSH | ||||
| 7 | ➜ | 4V8P | 0.2944 | 0 | F1 | LSU rRNA | G | 375 | A | 376 | A | 377 | C | 378 | * | G | 389 | G | 390 | G | 391 | C | 392 | U | 393 | A | 394 | A | 395 | A | 396 | A | 397 | G | 398 | A | 399 | C | 400 | tSS | cWW | ncSW | tHS | cWW | tWH | ntSH | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAC*GAGUGAAAAAGUAC | 2 |
| GAAC*GGGCUAAAAGAC | 1 |
| GAAC*GAGUGAAAUAGAGC | 1 |
| GAAC*GAGUGAAAAAGAAC | 1 |
| GAAC*GAGUGAAAGAGAAC | 1 |
| GCAC*GAGUGAAAGAGAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AGUGAAAAAGUA | 2 |
| AA*GGCUAAAAGA | 1 |
| AA*AGUGAAAUAGAG | 1 |
| AA*AGUGAAAAAGAA | 1 |
| AA*AGUGAAAGAGAA | 1 |
| CA*AGUGAAAGAGAU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.21 | Max 0.36
Coloring options: