Motif IL_50989.1 Version IL_50989.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V88 | 0.1534 | 5 | A6 | SSU rRNA | C | 1034 | G | 1035 | A | 1036 | * | U | 1095 | G | 1101 | cWW | cWW | |
| 2 | ➜ | 5A2Q | 0.0946 | 5 | 2 | SSU rRNA | C | 1091 | G | 1092 | A | 1093 | * | U | 1152 | G | 1158 | cWW | cWW | |
| 3 | ➜ | 3J7A | 0.0000 | 5 | A | SSU rRNA | C | 1103 | G | 1104 | A | 1105 | * | U | 1196 | G | 1202 | cWW | cWW | |
| 4 | ➜ | 3JAM | 0.1155 | 5 | 2 | SSU rRNA | C | 1033 | G | 1034 | A | 1035 | * | U | 1094 | G | 1100 | cWW | cWW | |
| 5 | ➜ | 3MOJ | 0.4768 | 0 | Single stack bend | A | LSU rRNA | C | 2540 | A | 2541 | A | 2542 | * | U | 2522 | G | 2523 | cWW | cWW |
| 6 | ➜ | 3J9W | 0.7827 | 0 | BA | LSU rRNA | C | 2527 | C | 2528 | U | 2529 | * | A | 2482 | G | 2483 | cWW | cWW | |
| 7 | ➜ | 4X4V | 0.8877 | 0 | B | Human MenBeta minihelix ending in CCACC | C | 3 | G | 4||A | C | 5 | * | G | 27 | G | 32 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGA*UCUUUGG | 4 |
| CGC*GG | 1 |
| CAA*UG | 1 |
| CCU*AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*CUUUG | 4 |
| G* | 1 |
| A* | 1 |
| C* | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single stack bend (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.48 | Max 0.92
Coloring options: