Motif IL_56233.1 Version IL_56233.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-12 | 2-13 | 3-11 | 3-12 | 4-5 | 4-11 | 5-10 | 6-9 | 7-8 | 13-14 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J9W | 0.2648 | BA | LSU rRNA | G | 903 | A | 904 | G | 905 | G | 906 | U | 907 | A | 908 | G | 909 | * | C | 962 | G | 963 | A | 964 | A | 965 | U | 966 | G | 967 | C | 968 | cWW | cWW | cSH | ntWH | tHS | cWW | ||||||
| 2 | ➜ | 5J7L | 0.2225 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | DA | LSU rRNA | G | 856 | G | 857 | G | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | U | 919 | A | 920 | C | 921 | cWW | cWW | cSH | tWH | tHS | cWW | |||||
| 3 | ➜ | 4V91 | 0.1016 | 1 | LSU rRNA | G | 991 | A | 992 | G | 993 | G | 994 | U | 995 | A | 996 | A | 997 | * | U | 1052 | A | 1053 | A | 1054 | A | 1055 | U | 1056 | A | 1057 | U | 1058 | cWW | cWW | ncSH | tWH | tHS | cWW | ||||||
| 4 | ➜ | 4V88 | 0.0000 | A5 | LSU rRNA | G | 991 | A | 992 | G | 993 | G | 994 | U | 995 | A | 996 | A | 997 | * | U | 1052 | A | 1053 | A | 1054 | A | 1055 | U | 1056 | A | 1057 | U | 1058 | cWW | cWW | cSH | tWH | tHS | cWW | ||||||
| 5 | ➜ | 3J79 | 0.1669 | A | LSU rRNA | C | 1113 | A | 1114 | G | 1115 | G | 1116 | U | 1117 | A | 1118 | G | 1119 | * | C | 1175 | C | 1176 | A | 1177 | A | 1178 | U | 1179 | A | 1180 | G | 1181 | cWW | cWW | cSH | tWH | tHS | cWW | ||||||
| 6 | ➜ | 3J7P | 0.8137 | S2 | SSU rRNA | C | 1629 | A | 1630 | U | 1631 | G | 1632 | A | 1633 | A | 1634 | C | 1635 | * | G | 1604 | G | 1605 | G | 1606 | A | 1607 | U | 1608 | C | 1609 | G | 1610 | cWW | ncWW | ntSH | ncWW | ncSH | ntSH | ntHS | tHS | cWW | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGGUAA*UAAAUAU | 2 |
| CAUGAAC*GGGAUCG | 1 |
| CAGGUAG*CCAAUAG | 1 |
| GAGGUAG*CGAAUGC | 1 |
| GGGGUAG*CGAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGUA*AAAUA | 2 |
| AUGAA*GGAUC | 1 |
| AGGUA*CAAUA | 1 |
| AGGUA*GAAUG | 1 |
| GGGUA*GAAUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 7x7 Sarcin-Ricin with intercalated A; G-bulge (1)
- Basepair signature
- cWW-cWW-L-R-R-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.35 | Max 0.84
Coloring options: