Description:
SSU Decoding Site -- Human. Bulge-cSW-tHS
Basepair signature:
cWW-cSW-tHS-cWW
Free text annotation:
Human SSU Decoding Site. Single Bulged A.
Intraclusteral linkage
Min 0.10 | Avg 0.05 | Max 0.10
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4break 5 6 7 81-82-73-64-5
112FQN0.00001A15A17A18G19*C30G31C32U33cWWcSWntHScWW
222OE50.09551A1490A1492A1493G1494*C1407G1408C1409U1410cWWcSWntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
AAAAG*CGCU2
Non-Watson-Crick part of the motif
SequenceCounts
AAA*GC2

Release history

Release0.70.80.90.100.110.121.01.11.21.31.41.51.61.71.81.91.101.111.121.13
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-042013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_57785.5Only in the parent motif
IL_57785.4
Compare
IL_2FQN_003, IL_2OE5_002IL_1S72_037

Children motifs

Child motifCommon motif instancesOnly in IL_57785.5Only in the child motif
IL_82133.1
Compare
IL_2FQN_003, IL_2OE5_002IL_1NUV_003, IL_429D_002, IL_4NVV_105

Mutual discrepancy heat map legend: