Motif IL_57785.5 Version IL_57785.5 of this group appears in releases 0.7 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 2FQN | 0.0000 | 1 | A+B | RNA (23-mer) | A | 15 | A | 17 | A | 18 | G | 19 | * | C | 30 | G | 31 | C | 32 | U | 33 | cWW | cSW | ntHS | cWW | |
| 2 | ➜ | 2OE5 | 0.0955 | 1 | B+A | RNA (17-mer) | A | 1490 | A | 1492 | A | 1493 | G | 1494 | * | C | 1407 | G | 1408 | C | 1409 | U | 1410 | cWW | cSW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 2 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_57785.5 | Only in the parent motif |
|---|---|---|---|
| IL_57785.4 Compare | IL_2FQN_003, IL_2OE5_002 | IL_1S72_037 |
Children motifs
| Child motif | Common motif instances | Only in IL_57785.5 | Only in the child motif |
|---|---|---|---|
| IL_82133.1 Compare | IL_2FQN_003, IL_2OE5_002 | IL_1NUV_003, IL_429D_002, IL_4NVV_105 |
- Annotations
- Basepair signature
- cWW-cSW-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.05 | Max 0.10
Coloring options: