Motif IL_82133.1 Version IL_82133.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_429D_002 | 429D | 0.6672 | 2 | D+C | RNA (11-mer) | G | 143 | G | 144 | A | 145 | G | 146 | * | C | 122 | C | 123 | G | 124 | C | 127 | cWW | ncWW | cWW |
2 | IL_4NVV_105 | 4NVV | 0.0000 | 1 | A | 23S Ribosomal RNA | G | 2853 | G | 2854 | G | 2855 | G | 2856 | * | C | 2880 | C | 2881 | G | 2882 | C | 2884 | cWW | cWS | cWW |
3 | IL_1NUV_003 | 1NUV | 0.5571 | 2 | F+E | RNA (11-mer) | G | 43 | G | 44 | A | 45 | G | 46 | * | C | 22 | C | 23 | A | 25 | C | 27 | cWW | ncWW | cWW |
4 | IL_2OE5_002 | 2OE5 | 0.7030 | 1 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | A | 1493 | G | 1494 | cWW | cWS | cWW |
5 | IL_2FQN_003 | 2FQN | 0.7455 | 1 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | A | 18 | G | 19 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGAG*CCGAGC | 2 |
CGCU*AAAAG | 2 |
GGGG*CCGAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GA*CGAG | 2 |
GC*AAA | 2 |
GG*CGA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | New id, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_82133.1 | Only in the parent motif |
---|---|---|---|
IL_57785.5 Compare | IL_2FQN_003, IL_2OE5_002 | IL_1NUV_003, IL_429D_002, IL_4NVV_105 | |
IL_46301.1 Compare | IL_1NUV_003, IL_429D_002 | IL_2FQN_003, IL_2OE5_002, IL_4NVV_105 | IL_3BNQ_002, IL_1NUV_002, IL_1FJG_008, IL_2AW7_010, IL_2QBG_108 |
Children motifs
Child motif | Common motif instances | Only in IL_82133.1 | Only in the child motif |
---|---|---|---|
IL_81597.1 Compare | IL_2FQN_003, IL_2OE5_002 | IL_1NUV_003, IL_429D_002, IL_4NVV_105 | IL_1VW3_042 |
IL_54696.1 Compare | IL_4NVV_105 | IL_2FQN_003, IL_1NUV_003, IL_429D_002, IL_2OE5_002 | |
IL_48183.2 Compare | IL_1NUV_003 | IL_2FQN_003, IL_429D_002, IL_2OE5_002, IL_4NVV_105 | IL_4NVV_011, IL_4CUV_048, IL_4IOA_055, IL_1LNG_002, IL_4NVV_056 |
IL_19493.1 Compare | IL_429D_002 | IL_2FQN_003, IL_1NUV_003, IL_2OE5_002, IL_4NVV_105 | IL_1NUV_002, IL_4A1B_070, IL_2QBG_108 |
- Annotations
-
- (5)
- Basepair signature
- cWW-L-R-cWS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.61 | Max 1.24
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