#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 7 81-83-64-5
1 IL_429D_002429D0.66722D+CRNA (11-mer)G143G144A145G146*C122C123G124C127cWWncWWcWW
2 IL_4NVV_1054NVV0.00001A23S Ribosomal RNAG2853G2854G2855G2856*C2880C2881G2882C2884cWWcWScWW
3 IL_1NUV_0031NUV0.55712F+ERNA (11-mer)G43G44A45G46*C22C23A25C27cWWncWWcWW
4 IL_2OE5_0022OE50.70301A+BRNA (16-mer) + RNA (17-mer)C1407G1408C1409U1410*A1490A1492A1493G1494cWWcWScWW
5 IL_2FQN_0032FQN0.74551B+ARNA (23-mer)C30G31C32U33*A15A17A18G19cWWcWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGAG*CCGAGC2
CGCU*AAAAG2
GGGG*CCGAC1
Non-Watson-Crick part of the motif
SequenceCounts
GA*CGAG2
GC*AAA2
GG*CGA1
Annotations
  • (5)
  • Basepair signature
    cWW-L-R-cWS-cWW
    Heat map statistics
    Min 0.10 | Avg 0.61 | Max 1.24
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