Motif IL_73044.1 Version IL_73044.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-4 | 1-11 | 2-9 | 3-8 | 3-10 | 3-11 | 4-6 | 4-7 | 5-6 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V8P | 0.1357 | 3 | F1 | LSU rRNA | U | 2152 | G | 2153 | A | 2154 | G | 2156 | G | 2157 | * | U | 2168 | G | 2169 | U | 2171 | G | 2172 | A | 2173 | A | 2175 | ncSS | cWW | tSS | tWW | tWW | cWW | |||||
| 2 | ➜ | 3J79 | 0.1158 | 4 | A | LSU rRNA | U | 2449 | G | 2450 | A | 2451 | A | 2454 | G | 2455 | * | U | 2466 | A | 2467 | U | 2469 | A | 2470 | A | 2471 | A | 2473 | cWW | ntSS | tWW | ntHH | ncWW | tWW | cWW | ||||
| 3 | ➜ | 4V91 | 0.0778 | 3 | 1 | LSU rRNA | C | 2156 | G | 2157 | A | 2158 | G | 2160 | G | 2161 | * | U | 2173 | G | 2174 | U | 2176 | G | 2177 | A | 2178 | G | 2180 | cWW | tSS | tWW | ncWW | tWW | cWW | ncSH | ||||
| 4 | ➜ | 4V88 | 0.0000 | 3 | A5 | LSU rRNA | C | 2156 | G | 2157 | A | 2158 | G | 2160 | G | 2161 | * | U | 2173 | G | 2174 | U | 2176 | G | 2177 | A | 2178 | G | 2180 | ncSS | cWW | tSS | tWW | ntHS | tWW | cWW | ||||
| 5 | ➜ | 5AJ0 | 0.1209 | 3 | A2 | LSU rRNA | C | 3631 | G | 3632 | A | 3633 | G | 3635 | G | 3636 | * | U | 3648 | G | 3649 | U | 3651 | G | 3652 | A | 3653 | G | 3655 | ncSS | cWW | tSS | tWW | ncWW | tWW | cWW | ||||
| 6 | ➜ | 3J7P | 0.1548 | 3 | 5 | LSU rRNA | C | 3660 | G | 3661 | A | 3662 | G | 3664 | G | 3665 | * | U | 3677 | G | 3678 | U | 3680 | G | 3681 | A | 3682 | G | 3684 | cWW | tSS | ntWW | tWW | cWW | ||||||
| 7 | ➜ | 3JCS | 0.2858 | 3 | 2 | LSU rRNA | U | 402 | G | 403 | A | 404 | G | 406 | C | 407 | * | G | 419 | U | 420 | U | 422 | A | 423 | U | 424 | G | 426 | ncSS | cWW | ntSS | tWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAGG*UGUUGACG | 2 |
| CGAUGG*UGUUGACG | 2 |
| UGAUGC*GUAUAUCG | 1 |
| UGAAAAG*UAUUAACA | 1 |
| UGACGG*UGAUGACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAG*GUUGAC | 2 |
| GAUG*GUUGAC | 2 |
| GAUG*UAUAUC | 1 |
| GAAAA*AUUAAC | 1 |
| GACG*GAUGAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-tSS-tWW-tWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.16 | Max 0.31
Coloring options: