Description:
Triple sheared
Basepair signature:
cWW-tSH-tHS-tHS-cWW
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.09 | Avg 0.46 | Max 0.80
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDisc 1 2 3 4 5break 6 7 8 9 101-91-102-32-72-82-93-73-84-75-65-78-98-10
1123V2F0.0000C1882G1883A1884A1885C1886*G1856G1857G1858A1859G1860nbifcWWtSHtHStHScWW
2133U5H0.1944U1645G1646A1647A1648U1649*A1806G1807G1808A1809A1810cWWtSHtHStHScWW
382A640.2106C378G379A380A381G382*C347G348G349A350G351cWWntSHtHSntHScWW
4113G780.2242C70U71A72A73C74*G113G114A115C116G117cWWntSHntHStHScWWncSH
592XZM0.2253G1672A1673A1674A1675A1676*U1649G1650G1651A1652C1653cWWntSHtHStHScWW
672A640.2643C284G285A286A287G288*C297G298G299A300G301cWWcSHtSHntHStHScWW
763DHS0.2697C284G285A286A287G288*C297G298G299A300G301cWWcSHtSHntHStHScWW
8143IWN0.2754C12A13A14A15C16*G31G32A33C34G35cWWntSHntHStHScWWncSH
9222ZJR0.2967C1865G1866A1867A1868A1869*U1848G1849G1850A1851G1852cWWntSHntHSntHScWW
10162QBG0.2995U1720G1721A1722G1723G1724*U1736G1737G1738A1739G1740cWWtSHtHSntHScWW
11104A1B0.3020U3217U3218A3219A3220C3221*G3189A3190G3191C3192G3193cWWntSHntHStHScWW
12231S720.3261C2515G2516A2517C2518C2519*G2501C2502A2503A2504G2505cWWtSHtHScWW
13201S720.3553U794G795A796A797G798*U815G816G817A818A819cWWtSHtHStHScWW
14172QBG0.3566U703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
15251U6B0.3611G56A57A58A59C60*G84C85A86A87C88cWWtSHtHScWWncWW
16153UCZ0.3647C22A23A24A25C26*G41G42A43C44G45cWWntSHtHScWW
1753U5F0.3672A1719G1720A1721A1722U1723*A1678G1679G1680A1681U1682cWWntSWtHStHScWW
18183V2F0.3683U703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
19284A1B0.3828C2837G2838A2839C2840G2841*C2823C2824A2825A2826G2827cWWtSHtHSbifcWW
20193U5H0.3886U834G835A836A837G838*U855G856G857A858G859cWWtSHtHStHScWW
21292QBG0.3912C2480G2481A2482C2483G2484*C2466C2467A2468A2469G2470cWWtSHtHSbifcWW
22263V2F0.4055C2480G2481G2482C2483G2484*C2466C2467G2468A2469G2470cWWtSHntHSbifcWW
23272ZJR0.4183C2459G2460G2461C2462G2463*C2445C2446G2447A2448G2449cWWtSHntHScWW
24242AW70.4247C1259G1260A1261C1262C1263*G1272C1273A1274A1275G1276cWWtSHtHSbifcWW
25303U5H0.4665C2849G2850A2851C2852A2853*U2835C2836A2837A2838G2839cWWtSHtHScWW
2632QBG0.5184U606U607A608A609C610*G618G619G620A621G622cWWperpntWHtHScWWperp
2741S720.5210C663U664A665A666C667*G679G680G681A682G683cWWntWHtHScWWncHH
28312XZM0.5249U525U526A527G528C529*G509A510A511C512A513cWWncWHncWWncWWntSHtHSncWScWWncWS
2923V2F0.5349U606U607A608A609G610*C618G619G620A621G622cWWperpntWHtHScWWperp
30212QWY0.5350A46A47A48A49G50*C16G17U18A19U20cWWntSHtSHntHWtHScWW
3112ZJR0.6380U616U617A618A619G620*C629G630G631A632G633cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAAG*UGGAG3
CGAAG*CGGAG3
CGACC*GCAAG2
CGGCG*CCGAG2
CAAAC*GGACG2
UUAAG*CGGAG2
CGACG*CCAAG2
CGACA*UCAAG1
CUAAC*GGGAG1
AAAAG*CGUAU1
UUAGC*GAACA1
AGAAU*AGGAU1
UUAAC*GGGAG1
UGAAG*UGGAA1
GAAAA*UGGAC1
CUAAC*GGACG1
UGAAU*AGGAA1
CGAAA*UGGAG1
UGAGG*UGGAG1
CGAAC*GGGAG1
UUAAC*GAGCG1
GAAAC*GCAAC1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*GGA11
GAC*CAA5
UAA*GGA4
AAA*GAC2
GGC*CGA2
AAA*GUA1
UAG*AAC1
UAA*AGC1
UAA*GAC1
AAA*GGA1
GAG*GGA1
AAA*CAA1

Mutual discrepancy heat map legend: