Motif IL_90094.1 Version IL_90094.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-7 | 1-8 | 2-6 | 2-7 | 3-6 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||24_444 | G | 47||||24_444 | G | 48||||24_444 | C | 49||||24_444 | * | G | 70||||24_444 | G | 71||||24_444 | A | 73||||24_444 | C | 74||||24_444 | cWW | ntWW | cWW | tWW | ncWW | cWW | |
| 2 | ➜ | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||13_455 | G | 47||||13_455 | G | 48||||13_455 | C | 49||||13_455 | * | G | 70||||13_455 | G | 71||||13_455 | A | 73||||13_455 | C | 74||||13_455 | cWW | ntWW | cWW | tWW | ncWW | cWW | |
| 3 | ➜ | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||6_445 | G | 47||||6_445 | G | 48||||6_445 | C | 49||||6_445 | * | G | 70||||6_445 | G | 71||||6_445 | A | 73||||6_445 | C | 74||||6_445 | cWW | ntWW | cWW | tWW | ncWW | cWW | |
| 4 | ➜ | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | ntWW | cWW | tWW | ncWW | cWW | |
| 5 | ➜ | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||18_445 | G | 47||||18_445 | G | 48||||18_445 | C | 49||||18_445 | * | G | 70||||18_445 | G | 71||||18_445 | A | 73||||18_445 | C | 74||||18_445 | cWW | ntWW | cWW | tWW | ncWW | cWW | |
| 6 | ➜ | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||12_455 | G | 47||||12_455 | G | 48||||12_455 | C | 49||||12_455 | * | G | 70||||12_455 | G | 71||||12_455 | A | 73||||12_455 | C | 74||||12_455 | cWW | ntWW | cWW | tWW | ncWW | cWW | |
| 7 | ➜ | 4V88 | 0.6242 | 1 | Non canonical cWW and near pair | A6 | SSU rRNA | C | 1644 | G | 1645 | C | 1646 | U | 1647 | * | A | 1753 | A | 1754 | A | 1756||A | G | 1757 | cWW | ncWW | ntWW | cWW | |||
| 8 | ➜ | 3J7P | 0.8156 | 1 | 5 | LSU rRNA | A | 2033 | G | 2034 | C | 2035 | C | 2036 | * | G | 1946 | G | 1948 | U | 1949 | U | 1950 | ncWW | ncWW | ncWW | cWW | ||||
| 9 | ➜ | 4V92 | 0.9245 | 0 | AZ | CrPV IRES | A | 6075 | A | 6076 | G | 6077 | U | 6078 | * | G | 6039 | C | 6040 | U | 6041 | U | 6042 | cWW | ncWW | cWW | |||||
| 10 | ➜ | 3BNS | 0.8937 | 1 | C+D | A site of human mitochondrial ribosome, chain three | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 13 | C | 14 | A | 16 | G | 17 | cWW | cWW | cWW | |||||
| 11 | ➜ | 4KZD | 0.9887 | 3 | Tandem non-canonical cWW pairs | R | RNA (84-MER) | G | 63 | A | 64 | G | 65 | C | 66 | * | G | 19 | A | 20 | G | 22 | C | 25 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GGUAC | 6 |
| GAGC*GAAGGAC | 1 |
| CACC*GCAAG | 1 |
| AGCC*GUGUU | 1 |
| CGCU*AAAAG | 1 |
| AAGU*GCUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*GUA | 6 |
| AG*AAGGA | 1 |
| AC*CAA | 1 |
| GC*UGU | 1 |
| GC*AAA | 1 |
| AG*CU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tWW and non-canonical cWW (6)
- Non canonical cWW and near pair (1)
- Tandem non-canonical cWW pairs (1)
- Basepair signature
- cWW-cWW-tWW-cWW
- Heat map statistics
- Min 0.62 | Avg 0.55 | Max 0.99
Coloring options: